| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1454029 | 48 (1.030) | 9 (0.210) | 8/242 | 4.5 | 16.9% | intergenic (‑108/+176) | sucA/arlS | oxoglutarate dehydrogenase (succinyl‑transferring) E1/sensor histidine kinase |
| ? | CP000730 | = 1454035 | 45 (1.060) | intergenic (‑114/+170) | sucA/arlS | oxoglutarate dehydrogenase (succinyl‑transferring) E1/sensor histidine kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1453884‑1454029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagaatcaacGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAG < CP000730/1454035‑1453900 cagaggctcctgtAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAA > 1:139947/14‑141cagaggctcctgtAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAA > 1:311941/14‑141 CAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTAACAATGTAATAATATCACTCTTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAA > 2:522518/1‑141 CAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAAT > 2:110071/1‑141 GAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAA < 1:420427/141‑1 CTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAATATGTTGACACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTGATTC < 2:342289/141‑1 TTCTTTCGTTAGTCATTTTACTCCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTGATTCTTC < 1:456579/141‑1 TTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTtaaagaacaaag > 2:291263/1‑129 CACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTT > 1:224059/1‑113 CACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTT < 2:224059/113‑1 TATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATA < 1:224891/122‑1 TATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATA > 2:224891/1‑122 ATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTG < 1:118117/45‑1 ATTTACCTATTTATCTGCTAAAAAGAAGAATCAACGCTTTTGTTG > 2:118117/1‑45 GAAGAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAA < 1:95514/141‑1 GAATCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAG < 2:267200/141‑1 TCAACGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAG > 1:110071/1‑141 ACAGGAGCCTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTT‑ACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1453884‑1454029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagaatcaacGCTTTTGTTGATTCTTCTTTTTAGCAGATAAATAGGTAAATCTACTTTAACAAATAACTAAATAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAG < CP000730/1454035‑1453900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |