New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1454029	48 (1.030)	9 (0.210)	8/242	4.5	16.9%	intergenic (‑108/+176)	sucA/arlS	oxoglutarate dehydrogenase (succinyl‑transferring) E1/sensor histidine kinase
	?	CP000730	= 1454035	45 (1.060)					intergenic (‑114/+170)	sucA/arlS	oxoglutarate dehydrogenase (succinyl‑transferring) E1/sensor histidine kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTAAAAAATTG  >  CP000730/1453895‑1454171                                                                                                                                             |                                                                                                                                         tGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGc                                                                                                                                          >  2:414933/1‑141 (MQ=255)      cttcttTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGa                                                                                                                                     <  1:110071/141‑1 (MQ=255)         cttttctttCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGAttc                                                                                                                                  >  2:267200/1‑141 (MQ=255)            ttctttcGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGAttcttc                                                                                                                               >  1:95514/1‑141 (MQ=255)              tggtattaatccATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTa                                                                                                                             <  2:271783/130‑1 (MQ=255)                        tCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGa                                                                                                                   >  2:225818/1‑141 (MQ=255)                                cacCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTAtttt                                                                                                           >  1:481350/1‑141 (MQ=255)                                 acCCTCGACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACATATTTATGTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTGATAGATGTATTTTa                                                                                                          >  2:67136/1‑141 (MQ=255)                                 acCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTa                                                                                                          >  2:234883/1‑141 (MQ=255)                                 acCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTa                                                                                                          >  2:117266/1‑141 (MQ=255)                                    cTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTg                                                                                                       <  1:69979/141‑1 (MQ=255)                                            aaaTGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTACAGTAGGTTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTCTAGATGTCTTTTATTGTAAAtttt                                                                                               >  2:269414/1‑141 (MQ=255)                                              aTGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTgg                                                                                             >  1:77646/1‑141 (MQ=255)                                                 ttGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTgg                                                                                             >  2:137521/1‑138 (MQ=255)                                                 ttGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTgg                                                                                             <  1:137521/138‑1 (MQ=255)                                                   gAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTa                                                                                        >  2:211914/1‑141 (MQ=255)                                                     aaCGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGAGGTATTTTATTGTAAATTTTGGGAGTaca                                                                                      >  2:509134/1‑141 (MQ=255)                                                        gCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTacaaca                                                                                   <  2:79530/141‑1 (MQ=255)                                                         cTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAg                                                                                  >  1:170255/1‑141 (MQ=255)                                                                  taataaTATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATaa                                                                         <  1:249772/141‑1 (MQ=255)                                                                    ataataTCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAg                                                                       <  2:139947/141‑1 (MQ=255)                                                                          tCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCAc                                                                 <  1:61710/141‑1 (MQ=255)                                                                          tCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCAc                                                                 <  1:61690/141‑1 (MQ=255)                                                                            aCTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTg                                                               >  2:166172/1‑141 (MQ=255)                                                                             cTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGt                                                              >  1:367008/1‑141 (MQ=255)                                                                                tttAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTa                                                           <  2:462907/141‑1 (MQ=255)                                                                                tttAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTa                                                           <  2:462915/141‑1 (MQ=255)                                                                                       aTTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGttt                                                    >  2:124379/1‑141 (MQ=255)                                                                                         ttGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTta                                                  >  1:540789/1‑141 (MQ=255)                                                                                           gTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTtata                                                <  1:291396/141‑1 (MQ=255)                                                                                             tAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTATTATAGCATTATAGATGCATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgt                                              <  1:267200/141‑1 (MQ=255)                                                                                                aGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgttgt                                           <  1:117266/141‑1 (MQ=255)                                                                                                 gTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgttgtt                                          <  2:367008/141‑1 (MQ=255)                                                                                                 gTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgttgtt                                          >  1:384516/1‑141 (MQ=255)                                                                                                        tACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGCTGATTCTTCTAGGTTTATAAATGCATTTTCTTATAAATATTGCGAGTACCACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATAc                                   <  1:509134/141‑1 (MQ=255)                                                                                                               ttATCTGCTAAAAAGAATAATCAACAAAAGCTTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTc                            <  1:269414/141‑1 (MQ=255)                                                                                                                 aTCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTcac                          <  2:89302/141‑1 (MQ=255)                                                                                                                      cTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTa                     >  1:470897/1‑141 (MQ=255)                                                                                                                      cTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTa                     >  1:129988/1‑141 (MQ=255)                                                                                                                         aaaaGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAAtg                  <  1:415707/141‑1 (MQ=255)                                                                                                                          aaaGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAAtgt                 <  2:289187/141‑1 (MQ=255)                                                                                                                           aagaagAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAgctgtgactaatgta                <  1:228771/141‑15 (MQ=255)                                                                                                                             gaagaaTCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTa              >  1:556050/1‑141 (MQ=255)                                                                                                                              aagaaTCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTAc             >  1:371207/1‑141 (MQ=255)                                                                                                                                 aaTCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTa          <  1:522518/141‑1 (MQ=255)                                                                                                                                   tCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTaaa        <  1:124379/141‑1 (MQ=255)                                                                                                                                      acaaAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTaaaaaa     >  1:542516/1‑141 (MQ=255)                                                                                                                                         aaaGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTAAAAAATTg  >  2:425578/1‑141 (MQ=255)                                                                                                                                         aaaGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTAAAAAATTg  <  1:471675/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         TGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTAAAAAATTG  >  CP000730/1453895‑1454171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.