New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1454029	48 (1.030)	9 (0.210)	8/242	4.5	16.9%	intergenic (‑108/+176)	sucA/arlS	oxoglutarate dehydrogenase (succinyl‑transferring) E1/sensor histidine kinase
	?	CP000730	= 1454035	45 (1.060)					intergenic (‑114/+170)	sucA/arlS	oxoglutarate dehydrogenase (succinyl‑transferring) E1/sensor histidine kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTAAAAAA  >  CP000730/1453892‑1454168                                                                                                                                          |                                                                                                                                            ctctGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACaaa                                                                                                                                          <  1:557093/141‑1 (MQ=255)    tGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGc                                                                                                                                       >  2:414933/1‑141 (MQ=255)         cttcttTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGa                                                                                                                                  <  1:110071/141‑1 (MQ=255)            cttttctttCGTTAGTCATTTTACACCCTCCACAAATATGTTGACACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATcaacgcttttgttgattc                                                                                                                               <  2:342289/141‑15 (MQ=255)            cttttctttCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGAttc                                                                                                                               >  2:267200/1‑141 (MQ=255)               ttctttcGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGAttcttc                                                                                                                            >  1:95514/1‑141 (MQ=255)                 tggtattaatccATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTa                                                                                                                          <  2:271783/130‑1 (MQ=255)                           tCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGa                                                                                                                >  2:225818/1‑141 (MQ=255)                                   cacCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATcaacgcttttgtt                                                                                                                                    <  2:224059/113‑10 (MQ=255)                                   cacCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATcaacgcttttgtt                                                                                                                                    >  1:224059/1‑104 (MQ=255)                                   cacCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTAtttt                                                                                                        >  1:481350/1‑141 (MQ=255)                                    acCCTCGACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACATATTTATGTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTGATAGATGTATTTTa                                                                                                       >  2:67136/1‑141 (MQ=255)                                    acCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTa                                                                                                       >  2:117266/1‑141 (MQ=255)                                    acCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTa                                                                                                       >  2:234883/1‑141 (MQ=255)                                       cTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTg                                                                                                    <  1:69979/141‑1 (MQ=255)                                               aaaTGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTACAGTAGGTTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTCTAGATGTCTTTTATTGTAAAtttt                                                                                            >  2:269414/1‑141 (MQ=255)                                                 aTGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTgg                                                                                          >  1:77646/1‑141 (MQ=255)                                                    ttGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTgg                                                                                          <  1:137521/138‑1 (MQ=255)                                                    ttGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTgg                                                                                          >  2:137521/1‑138 (MQ=255)                                                      gAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTa                                                                                     >  2:211914/1‑141 (MQ=255)                                                        aaCGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGAGGTATTTTATTGTAAATTTTGGGAGTaca                                                                                   >  2:509134/1‑141 (MQ=255)                                                           gCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTacaaca                                                                                <  2:79530/141‑1 (MQ=255)                                                            cTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAg                                                                               >  1:170255/1‑141 (MQ=255)                                                                     taataaTATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATaa                                                                      <  1:249772/141‑1 (MQ=255)                                                                       ataataTCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAg                                                                    <  2:139947/141‑1 (MQ=255)                                                                             tCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCAc                                                              <  1:61710/141‑1 (MQ=255)                                                                             tCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCAc                                                              <  1:61690/141‑1 (MQ=255)                                                                               aCTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTg                                                            >  2:166172/1‑141 (MQ=255)                                                                                cTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGt                                                           >  1:367008/1‑141 (MQ=255)                                                                                   tttAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTa                                                        <  2:462907/141‑1 (MQ=255)                                                                                   tttAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTa                                                        <  2:462915/141‑1 (MQ=255)                                                                                          aTTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGttt                                                 >  2:124379/1‑141 (MQ=255)                                                                                            ttGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTta                                               >  1:540789/1‑141 (MQ=255)                                                                                              gTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTtata                                             <  1:291396/141‑1 (MQ=255)                                                                                                tAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTATTATAGCATTATAGATGCATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgt                                           <  1:267200/141‑1 (MQ=255)                                                                                                   aGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgttgt                                        <  1:117266/141‑1 (MQ=255)                                                                                                    gTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgttgtt                                       <  2:367008/141‑1 (MQ=255)                                                                                                    gTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAgttgtt                                       >  1:384516/1‑141 (MQ=255)                                                                                                           tACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGCTGATTCTTCTAGGTTTATAAATGCATTTTCTTATAAATATTGCGAGTACCACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATAc                                <  1:509134/141‑1 (MQ=255)                                                                                                                  ttATCTGCTAAAAAGAATAATCAACAAAAGCTTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTc                         <  1:269414/141‑1 (MQ=255)                                                                                                                    aTCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTcac                       <  2:89302/141‑1 (MQ=255)                                                                                                                         cTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTa                  >  1:470897/1‑141 (MQ=255)                                                                                                                         cTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTa                  >  1:129988/1‑141 (MQ=255)                                                                                                                            aaaaGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAAtg               <  1:415707/141‑1 (MQ=255)                                                                                                                             aaaGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAAtgt              <  2:289187/141‑1 (MQ=255)                                                                                                                              aagaagAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAgctgtgactaatgta             <  1:228771/141‑15 (MQ=255)                                                                                                                                gaagaaTCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTa           >  1:556050/1‑141 (MQ=255)                                                                                                                                 aagaaTCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTAc          >  1:371207/1‑141 (MQ=255)                                                                                                                                    aaTCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTa       <  1:522518/141‑1 (MQ=255)                                                                                                                                      tCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTaaa     <  1:124379/141‑1 (MQ=255)                                                                                                                                         acaaAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTaaaaaa  >  1:542516/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                            CTCTGAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTAGATTTACCTATTTATCTGCTAAAAAGAAGAATCAACAAAAGCGTTGATTCTTCTAGGTTTATAGATGTATTTTATTGTAAATTTTGGGAGTACAACAGAAATGATAAAGAACCACTGTTTATTTGTTTTATAGTTGTTCTTATACATTAGTCACAGCTAATGTGTACTTAAAAAA  >  CP000730/1453892‑1454168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.