New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2716786 =	40 (1.160)	4 (0.120)	4/264	4.8	10.0%	intergenic (+94/+56)	ynzC/USA300HOU_2569	hypothetical protein/possible lactoylglutatione lyase
	?	CP000730	2866775 =	32 (0.940)					intergenic (‑174/+279)	USA300HOU_2711/noc	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2716877‑2716786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCG  >  CP000730/2866775‑2866903                                                                                                                                                                                                                               CTTGATGGACACCATTTTAATTTTTTAGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGTTTAATGTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAC                                                                                  >  1:43378/1‑141            CCATTTTAATTTTTTAGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGTTTAATGTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCGGCAAGGT                                                                       <  2:187783/141‑1                                      ATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGTTTAATGTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTA                                             >  2:321658/1‑141                                                          AATAAAAAGCCCATACAGAGATGAAGTTTAATGTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCATTCAGT                         >  2:43354/1‑141                                                                                 ctgagataatcGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTtg  <  1:207844/130‑3                                                                                                                                                                                                                               CTTGATGGACACCATTTTAATTTTTTGGTCTGCTAAAATGAAATTCTCAAAAGAATAAATAAAAAGCCCATACAGAGATGAAGCGTAATGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2716877‑2716786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCG  >  CP000730/2866775‑2866903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.