New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2716786 =	40 (1.160)	4 (0.120)	4/264	4.8	10.0%	intergenic (+94/+56)	ynzC/USA300HOU_2569	hypothetical protein/possible lactoylglutatione lyase
	?	CP000730	2866775 =	32 (0.940)					intergenic (‑174/+279)	USA300HOU_2711/noc	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCG  >  CP000730/2866639‑2866903                                                                                                                                         |                                                                                                                                 cGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACATTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGt                                                                                                                              >  2:331491/1‑141 (MQ=255)   tATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTgg                                                                                                                            >  2:29679/1‑141 (MQ=255)    agcATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTGCAAATGAAAGTATATCCAGCTCAAATTAggggtgcaa                                                                                                                           >  2:105252/3‑135 (MQ=255)    aTCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTggg                                                                                                                           <  2:34361/141‑1 (MQ=255)    aTCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAAGTAggggtgcag                                                                                                                           >  2:105253/1‑135 (MQ=255)                       aaaCTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGc                                                                                                        <  1:301428/141‑1 (MQ=255)                        aaCTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCa                                                                                                       >  2:438387/1‑141 (MQ=255)                           ttAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAGGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCaaaa                                                                                                    <  1:100623/141‑1 (MQ=255)                             aaaTTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                  <  1:303159/141‑1 (MQ=255)                                ttttCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATCTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAatttac                                                                                               <  1:336196/141‑2 (MQ=255)                                ggtgcatatGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAatttat                                                                                               <  1:81616/133‑1 (MQ=255)                                    cTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                                                           >  1:293596/1‑141 (MQ=255)                                     tACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgt                                                                                          <  2:273618/141‑1 (MQ=255)                                          tAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTcc                                                                                     >  1:162464/1‑141 (MQ=255)                                                 aaCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAcccaa                                                                              >  2:322980/1‑139 (MQ=255)                                                  aCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTATCGCAAAATTTATTTCGTCGTCCCACCCCAg                                                                             <  2:350572/141‑1 (MQ=255)                                                   cTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGc                                                                            >  1:114679/1‑141 (MQ=255)                                                      aaGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAg                                                                         <  1:29679/141‑1 (MQ=255)                                                                   aaaGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGAGGGACAGAAATGATATTTTCTCAAAATTTATTTAGTCGTCCCACACCATAAAGGTTAACTAGAAtt                                                            >  2:318875/1‑141 (MQ=37)                                                                            aTGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                   <  1:408346/141‑1 (MQ=255)                                                                                      cATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGa                                                                    >  2:251135/1‑114 (MQ=255)                                                                                      cATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGa                                                                    <  1:251135/114‑1 (MQ=255)                                                                                         aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGAAAAAAAAAAAAAAAAGCTTGTTACAAgcgc                                      <  2:335065/141‑1 (MQ=21)                                                                                            cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                   >  1:222913/1‑141 (MQ=255)                                                                                            cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                   >  1:222813/1‑141 (MQ=255)                                                                                                cAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                               <  1:398415/141‑1 (MQ=255)                                                                                                              aaTGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                 >  1:392486/1‑141 (MQ=255)                                                                                                               aTGAAAGTATATCCAGCTCAAATTAGGGAGGGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                >  1:432432/1‑141 (MQ=255)                                                                                                                tGAAGGTATATCCAGCTCAAATTAGGGAGAGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGAAAAAAAAAAAAAAAAGCTTGTTACGAGCGCATTTTCGTTCAGTCAACTACTGc               <  2:54678/141‑1 (MQ=17)                                                                                                                 gAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc              >  1:214247/1‑141 (MQ=255)                                                                                                                      tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat         <  2:26224/141‑1 (MQ=255)                                                                                                                        tatCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa       >  1:436799/1‑141 (MQ=255)                                                                                                                             ctgagataatcgggAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtttg  <  1:207844/130‑3 (MQ=11)                                                                                                                                         |                                                                                                                                 CGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCG  >  CP000730/2866639‑2866903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.