New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2716786 =	40 (1.160)	4 (0.120)	4/264	4.8	10.0%	intergenic (+94/+56)	ynzC/USA300HOU_2569	hypothetical protein/possible lactoylglutatione lyase
	?	CP000730	2866775 =	32 (0.940)					intergenic (‑174/+279)	USA300HOU_2711/noc	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTC  >  CP000730/2716650‑2716922                                                                                                                                         |                                                                                                                                         aGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAGGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAt                                                                                                                                      >  1:192229/1‑141 (MQ=255)      aTGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGc                                                                                                                                 <  1:430576/141‑1 (MQ=255)               gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATctct                                                                                                                        <  1:351700/141‑1 (MQ=255)                 caacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGt                                                                                                                      <  1:426170/141‑1 (MQ=255)                      aTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATggg                                                                                                                 <  1:300015/141‑1 (MQ=255)                       tACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGc                                                                                                                <  2:79624/141‑1 (MQ=255)                               tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                                                        <  1:221036/141‑1 (MQ=255)                                          aaTATTTGCTCACGGGGTATTGCACTTACGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTCTTTCTTTATTCTTTTgc                                                                                             >  2:39364/1‑140 (MQ=255)                                            tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgaga                                                                                           <  2:5710/141‑1 (MQ=255)                                              tttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt                                                                                         <  1:328937/141‑1 (MQ=255)                                               ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAtt                                                                                        <  2:45546/141‑1 (MQ=255)                                                    cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt                                                                                   <  2:281176/141‑1 (MQ=255)                                                     aCGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAttt                                                                                  >  2:162854/1‑141 (MQ=255)                                                           tATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAg                                                                            <  2:242223/141‑1 (MQ=255)                                                             ttGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATtataaaaaaa                                                                          <  2:194637/141‑7 (MQ=255)                                                              tGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGAcc                                                                         >  1:119175/1‑141 (MQ=255)                                                                       ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATGCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                                                                <  2:365978/141‑1 (MQ=255)                                                                         tGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCCTCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaa                                                              >  1:30752/1‑141 (MQ=255)                                                                          gCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaaaa                                                             >  1:166932/1‑141 (MQ=255)                                                                           ccAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAAt                                                            >  2:75076/1‑141 (MQ=255)                                                                              aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt                                                         >  2:265323/1‑141 (MQ=255)                                                                                   ccTCATAAACAAAGCCCGTACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                                                    >  2:88440/1‑141 (MQ=255)                                                                                      cATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTTTTTTTATAATTTCTTTTTATCATACCATTTAATTAAAATGGTGTCCATCa                                                 >  2:215540/1‑141 (MQ=255)                                                                                      cATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCa                                                 >  2:222577/1‑141 (MQ=255)                                                                                                 cccATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCGTTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCGAGATCTTTGaa                                      >  1:122409/1‑141 (MQ=255)                                                                                                 cccATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGaa                                      <  1:190051/141‑1 (MQ=255)                                                                                                    aTACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACAt                                   <  2:133254/141‑1 (MQ=255)                                                                                                             gAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATa                          <  2:2994/141‑1 (MQ=255)                                                                                                              aaGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCATTTTATTTATTCGTTTGAGAGTTTCATGGTAGCAGACCAAAAAATTAAAATCGTGTCCATCAAGATCTTTGAACATTGCTCCATaa                         >  1:372502/1‑141 (MQ=255)                                                                                                                  cacaaataggtCGCAGCATGGAGCACATTACGCTGTATCTCGGTAGTGGCTCGTTAGTGAGTCGTGGTAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAAcc                     <  1:39364/132‑1 (MQ=255)                                                                                                                   acTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaa                                                               <  1:202105/98‑1 (MQ=255)                                                                                                                   acTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaa                                                               >  2:202105/1‑98 (MQ=255)                                                                                                                              gCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACtt         >  2:417165/1‑140 (MQ=255)                                                                                                                              gCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTg         <  1:75076/141‑1 (MQ=255)                                                                                                                                 ccATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTg      >  1:155463/1‑141 (MQ=255)                                                                                                                                 ccATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTg      >  1:56297/1‑141 (MQ=255)                                                                                                                                  cATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTgg     <  1:162854/141‑1 (MQ=255)                                                                                                                                  cATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTgg     <  1:255155/141‑1 (MQ=255)                                                                                                                                     ggTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTc  >  1:77022/1‑141 (MQ=255)                                                                                                                                     ggTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTc  >  1:290972/1‑141 (MQ=255)                                                                                                                                         |                                                                                                                                         AGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTC  >  CP000730/2716650‑2716922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.