New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	391559 =	25 (0.680)	3 (0.080)	3/250	NT	11.1%	coding (564/927 nt)	USA300HOU_0358	possible lactoylglutathione lyase
	?	CP000730	391580 =	24 (0.670)					coding (585/927 nt)	USA300HOU_0358	possible lactoylglutathione lyase

CAAGCATATCAAATTTTAGGAATAGGGCCAGTCGAATTAAGAGTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTACAACAACAA  >  CP000730/391440‑391718                                                                                                                                             |                                                                                                                                           aaattgcatctaagtcactcatttgtggtgtattaactgcaatatgatggatataacctcgtccaggtctttcacgttgtccctgttgctcaataactacaaaatccgaatataaacctTGTGCTGACATTAGCACCACaa                                                                                                                                            <  2:158236‑M1/22‑1 (MQ=255)             agtcactcatttgtggtgtattaactgcaatatgatggatataacctcgtccaggtctttcacgttgtccctgttgctcaataactacaaaatccgaatataaaccttgtgctgacattagcaccacaAGGTTTATATTCg                                                                                                                                <  1:75764‑M2/13‑1 (MQ=255)                  aGGAATAGGGCCAGTCGAATTAAGAGTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGAttt                                                                                                                           >  2:182197/1‑141 (MQ=255)                            ccAGTCGAATTAAGAGTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTAtt                                                                                                                 <  1:403885/141‑1 (MQ=255)                                 cGAATTAAGAGTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCa                                                                                                            <  1:292006/141‑1 (MQ=255)                                   aaTTAAGAGTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAAc                                                                                                          >  2:217519/1‑141 (MQ=255)                                         gagTTAGAAATGCAGCGCGTACGTTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGAc                                                                                                    <  2:245306/141‑1 (MQ=255)                                         aatatgatggatataacctcgtccaggtctttcacgttgtccctgttgctcaataactacaaaatccgaatataaaccttgtgctgacattagcaccacaAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGAc                                                                                                    <  1:158236‑M2/41‑1 (MQ=255)                                           gTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACaa                                                                                                  >  2:456922/1‑141 (MQ=255)                                                    gCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGa                                                                                         >  2:272448/1‑141 (MQ=255)                                                     cAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGAc                                                                                        >  2:40342/1‑141 (MQ=255)                                                     cAGCGCGTACGGTAGAATCCTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGAc                                                                                        >  2:48380/1‑141 (MQ=255)                                                        cgcgTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTg                                                                                     >  1:197679/1‑141 (MQ=255)                                                          cgTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGa                                                                                   <  2:412963/141‑1 (MQ=255)                                                          cgTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGa                                                                                   <  1:283160/141‑1 (MQ=255)                                                                     aTTTTTTTAAATTGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGCCGAGGTTatat                                                                        >  2:235346/1‑141 (MQ=255)                                                                              aaaTGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCatat                                                               <  2:329348/141‑1 (MQ=255)                                                                               gtccctgttgctcaataactacaaaatccgaatataaacctTGTGGTGCTAATGTCAGCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATAtt                                                              <  1:158236‑M1/100‑1 (MQ=255)                                                                                  gTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCa                                                           >  2:259463/1‑141 (MQ=255)                                                                                              cGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATAcacca                                               <  2:446970/141‑1 (MQ=255)                                                                                              cGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATAcacca                                               <  1:97620/141‑1 (MQ=255)                                                                                                cAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACcaca                                             >  1:38878/1‑141 (MQ=255)                                                                                                  aaaGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACaaa                                           >  1:63059/1‑141 (MQ=255)                                                                                                      agaTAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAg                                       <  1:432286/141‑1 (MQ=255)                                                                                                           cgaatataaacctTGTGGTGCTAATGTCAGCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACt                                  <  1:75764‑M1/128‑1 (MQ=255)                                                                                                            taaATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACtt                                 >  2:31835/1‑141 (MQ=255)                                                                                                                    tCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTCATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCaa                         >  2:122706/1‑141 (MQ=255)                                                                                                                      gATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAAtt                       <  1:195775/141‑1 (MQ=255)                                                                                                                       ttgtggtgctaatgtcagcacaAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAAttt                      <  2:158236‑M2/119‑1 (MQ=255)                                                                                                                           GCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACaa                  <  1:34069‑M1/141‑1 (MQ=255)                                                                                                                            cTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAg                 >  2:391709/1‑141 (MQ=255)                                                                                                                                     gCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTacaa        >  2:56527/1‑141 (MQ=255)                                                                                                                                     gCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTacaa        >  2:438794/1‑141 (MQ=255)                                                                                                                                      caccacAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTacaac       >  1:286541/1‑141 (MQ=255)                                                                                                                                      caccacAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTacaac       >  1:36071/1‑141 (MQ=255)                                                                                                                                      caccacAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTacaac       <  2:50600/141‑1 (MQ=255)                                                                                                                                        ccacAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTacaacaa     >  1:320287/1‑141 (MQ=255)                                                                                                                                           caAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTAcaacaacaa  <  1:31612‑M2/139‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           CAAGCATATCAAATTTTAGGAATAGGGCCAGTCGAATTAAGAGTTAGAAATGCAGCGCGTACGGTAGAATTTTTGGAAAATGTCTTAGGTTATCGCAAAAGAGATAATAAATCATTCGATGTGCTGACATTAGCACCACAAGGTTTATATTCGGATTTTGTAGTTATTGAGCAACAGGGACAACGTGAAAGACCTGGACGAGGTTATATCCATCATATTGCAGTTAATACACCACAAATGAGTGACTTAGATGCAATTTACAAGAAATTACAACAACAA  >  CP000730/391440‑391718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.