| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2777745 | 41 (0.650) | 3 (0.050) | 3/244 | NT | 6.9% | coding (495/705 nt) | USA300HOU_2631 | transcriptional regulator |
| ? | CP000730 | = 2777785 | 42 (0.710) | coding (455/705 nt) | USA300HOU_2631 | transcriptional regulator | |||||
TTTTTCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2777601‑2777745‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcatTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTC < CP000730/2777785‑2777647 TTTTTCATCTTTAAGTTCATGAATAATATGACCAGCCGTTTCCCGGGAAATCCCCGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCTGATCCTACTGTCTGACAAAGAT > 1:502392/1‑140 TTTCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGG > 1:388006/1‑140 TCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATAACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCA > 2:615589/1‑140 GAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCATTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATA < 1:665579/140‑1 TCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCATTAAAAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAG > 2:596489/1‑140 CTGACATAGATGGCATTAAAAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGA < 1:596489/140‑1 GCAATAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGACCAAAATTAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGAT < 2:605885/140‑1 TTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTC > 1:674707/1‑140 TTTTTCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2777601‑2777745‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcatTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTC < CP000730/2777785‑2777647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |