Predicted mutation
evidence seq id position mutation freq annotation gene description
JC CP000730 567,301 (GGT)4→3 5.5% coding (196‑198/462 nt) ctsR → CtsR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 567293 =73 (1.120)4 (0.070) 3/238 NT 5.5% coding (188/462 nt) ctsR CtsR family transcriptional regulator
?CP000730 = 567289 70 (1.180)coding (184/462 nt) ctsR CtsR family transcriptional regulator

TTTATTAACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/567440‑567293
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ac‑‑cac‑caccacGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTCTTCAAAT  <  CP000730/567289‑567150
                                                                                                                                                                                                                                                                                                   
TTTATTAACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCAGATGCATCTTTATTTTCAATTTTATTGCTTCGTTTGTAAC‑‑Cc                                                                                                                                                      >  2:57916/1‑140
   ATTAACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCA                                                                                                                                                  <  2:673478/141‑1
    TTAACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCAC                                                                                                                                                 <  2:252998/141‑1
    TTAACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCAC                                                                                                                                                 <  1:706049/141‑1
     TAACATTTTATCTAAAAGACCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACC                                                                                                                                                <  1:262387/141‑1
      AACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACCA                                                                                                                                               >  1:237229/1‑141
                                               TTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAACCGCACGCACGACGTTTACTTTCGTTTTCATAACCATGTTCATTAGTGAA                                                                                                         >  1:19614/1‑141
                                               TTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCG                                                                                                      >  2:117977/1‑141
                                                                                         AATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAA                                                            <  2:694906/141‑1
                                                                                                   GTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACCACGTTTACTTTCGATTTCATAACCATGTTCAGTAGTGAATCGTGTTTTGATTCCATAATTTAATTGTGATGGTACGCAATCAAACCGCTGTtag                                                  >  1:255341/1‑138
                                                                                                                                         AC‑‑CACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGA            >  1:684478/1‑141
                                                                                                                                          C‑‑CACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCTTTCGAC           >  2:711795/1‑141
                                                                                                                                             CACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACT          <  2:498686/141‑1
                                                                                                                                              ACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCACCGACATCTTCATTCGACTC         >  2:329195/1‑141
                                                                                                                                              ACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTC         >  2:580649/1‑141
                                                                                                                                              ACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTC         >  2:547894/1‑141
                                                                                                                                              ACCACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAAAGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTC         >  2:213748/1‑141
                                                                                                                                                  ACCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTCTTC      >  2:83062/1‑141
                                                                                                                                                   CCACGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTCTTCA     >  1:223873/1‑141
                                                                                                                                                      CGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTCTTCAAAT  <  1:442962/141‑1
                                                                                                                                                                                                                                                                                                   
TTTATTAACATTTTATCTAAAAGCCCATCAATAATATAATAAGCTTGTTGTTGAGAAATAGAAGGTCCAATCAGCTGAAGCAAATGATTAATATAACCTGTTGCATCTTTATTTTCAATTTTAGTGATTCGGATGTAAC‑‑CACCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/567440‑567293
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ac‑‑cac‑caccacGTTTACTTTCGATTTCATAACCATGTTCATTAGTGAATCGTGTTTTGATTACATAATTTAATTGTGATGGTACGCAATCAAAACGCTGTGCGATATTCGCTCTCTGAATTTCAACGACATCTTCATTCGACTCTTCAAAT  <  CP000730/567289‑567150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.