New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2082368 =82 (1.260)3 (0.050) 3/238 NT 3.9% intergenic (+9/+616) USA300HOU_1940/mapW2 aminotransferase/cell surface protein MapW2
?CP000730 2082406 = 73 (1.230)intergenic (+47/+578) USA300HOU_1940/mapW2 aminotransferase/cell surface protein MapW2

TTTGATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2082518‑2082368
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAA  >  CP000730/2082406‑2082542
                                                                                                                                                                                                                                                                                                
TTTGATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG                                                                                                                                                     >  2:196939/1‑141
   ttTTTTTTTTGGAGAGATGTATAAAACTGATTAGGTATGGTGTTTGACAGGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGATGGTGTAATTTTAAAAATAAAAAACCAATAATCCGAGTGATACTCATCAGATT                                                                                                                                                  >  2:225769/3‑141
    ATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTA                                                                                                                                                 >  2:632788/1‑141
     TTTTGTTAGGAGAGATGTACAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT                                                                                                                                                >  1:463511/1‑141
      TTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATT                                                                                                                                               >  2:201398/1‑141
                                      TATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAATGAATAATTTTAAAAATAAAAAACCAATAATCCGCGGCATACTCATCAGATGATGAGTATTTTATGTTTAAAATAATAGCTTCTTTC                                                                                                               >  1:92474/1‑141
                                      TATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTt                                                                                                               >  2:92474/1‑140
                                                                                       AAGAAGGAATAATTTTAAAAATTAAAAACATTTCATCCATGTCTAACTCATCATATTATTGGTTTTGTATTTTTAAAATTATTCCTACTTTCAAAGGATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACC                                                              <  2:644933/141‑1
                                                                                                                                               TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGT      <  1:581802/141‑1
                                                                                                                                               TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGT      <  2:75889/141‑1
                                                                                                                                                 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCTACTTGTCAAACACTATACCTAATTAGTTTTATACATCACTCCTAACAAAGTCAAAAAATCGGACAGATGAAAAGTAA    <  2:231413/141‑1
                                                                                                                                                  TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAA   <  1:354091/141‑1
                                                                                                                                                  TGGTTTTTTATTTTAAAAATTATTCCTTCCTTCAAAGTACCAAAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGGTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAA   <  1:65363/141‑1
                                                                                                                                                   GGTTTTTTTTTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAA  <  1:710812/141‑1
                                                                                                                                                                                                                                                                                                
TTTGATTTTGTTAGGAGAGATGTATAAAACTAATTAGGTATAGTGTTTGACAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2082518‑2082368
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAA  >  CP000730/2082406‑2082542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.