BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2082368 =	82 (1.260)	3 (0.050)	3/238	NT	3.9%	intergenic (+9/+616)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2
*	?	CP000730	2082406 =	73 (1.230)	3 (0.050)	3/238	NT	3.9%	intergenic (+47/+578)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2

Only 100 of 101 total aligned reads displayed.

ATTGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTC  >  CP000730/2082228‑2082504

aTTGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCa                                                                                                                                          <  2:293985/141‑1 (MQ=255)

 ttGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCaa                                                                                                                                         >  1:201398/1‑141 (MQ=255)

 ttGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCaa                                                                                                                                         >  1:217589/1‑141 (MQ=255)

 ttGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGAGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCaa                                                                                                                                         >  1:501240/1‑141 (MQ=255)

 ttGAAAAATATTCAATTGGTGTTATTGCACATAATGCAACAGACAATCGTAGAGCGTTTAGCTGTATAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGGGATTGATGACTTAAGATAATTAATTTCaa                                                                                                                                         >  2:151562/1‑141 (MQ=255)

  tGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAAc                                                                                                                                        >  2:189274/1‑141 (MQ=255)

   ttttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgacaagttgctgaataaaatatatcttatgatactttgaaagaaggaataattttaaaaaaaaaaAAcc                                                                                                                                       <  1:710812‑M1/4‑1 (MQ=255)

    tttacttttcatctgtccgattttttgattttgttaggagagatgtataaacctaattaggtatagtgtttgacaagttgctgaataaaatatatcttttggtactttgaaggaaggaataatttttaaaataaaaAACCa                                                                                                                                      <  1:65363‑M1/5‑1 (MQ=255)

    tttacttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgacaagttgctgaataaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCa                                                                                                                                      <  1:354091‑M1/5‑1 (MQ=255)

     ttacttttcatctgtccgattttttgactttgttaggagtgatgtataaaactaattaggtatagtgtttgacaagtagctgaataaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCaa                                                                                                                                     <  2:231413‑M1/6‑1 (MQ=255)

       acttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgacaagttgctgaataaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCaata                                                                                                                                   <  1:581802‑M1/8‑1 (MQ=255)

       acttttcatctgtccgattttttgattttgttaggagagatgtataaaactaattaggtatagtgtttgacaagttgctgaataaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCaata                                                                                                                                   <  2:75889‑M1/8‑1 (MQ=255)

       aaTATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCaata                                                                                                                                   <  2:495292/141‑1 (MQ=255)

        atatTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCaataa                                                                                                                                  >  1:82590/1‑141 (MQ=255)

          atTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATc                                                                                                                                >  1:74932/1‑141 (MQ=255)

             cAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCtga                                                                                                                             >  2:602215/1‑141 (MQ=255)

              aaTTGGTGTTATTGCACTTAATGCAACATATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCtgat                                                                                                                            <  1:95129/141‑1 (MQ=255)

              aaTTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCtgat                                                                                                                            >  2:380686/1‑141 (MQ=255)

               aTTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCtgatg                                                                                                                           <  1:703275/141‑1 (MQ=255)

                    tgtTATTGCACTTAATGCAACAGATATTCGTATTGCGTGTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTAAAAAAGCGATCAGTATGGCGACGTGATTAATTTCAACCAATAATCTGATGAGTAt                                                                                                                      <  1:370938/141‑1 (MQ=255)

                     gtTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATg                                                                                                                     >  1:393239/1‑141 (MQ=255)

                       tATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGAc                                                                                                                   <  1:3212/141‑1 (MQ=255)

                        aTTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCTACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACt                                                                                                                  <  1:499177/141‑1 (MQ=255)

                          tGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCg                                                                                                                <  1:776080/141‑1 (MQ=255)

                          tGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCg                                                                                                                >  1:246861/1‑141 (MQ=255)

                            cACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGa                                                                                                              >  2:58499/1‑141 (MQ=255)

                            cACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGAAATCCCACATGTATTTGATTCAATTGCTAAAGGGATTGATACCTTAAGATAATTAATTTCAACCAATAATCTGATGAGtgaggctcgaa                                                                                                              >  2:340085/1‑131 (MQ=255)

                               ttAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGatta                                                                                                           >  1:413487/1‑141 (MQ=255)

                               ttAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGatta                                                                                                           >  1:742704/1‑141 (MQ=255)

                                   tGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTACGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTgg                                                                                                       >  1:210838/1‑141 (MQ=255)

                                      aaCAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGttt                                                                                                    >  2:354091/1‑141 (MQ=255)

                                       agtgATATTCATCTTGAGTTAAGTTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGTCTCGGATTATTGGtttt                                                                                                   <  2:749438/138‑1 (MQ=255)

                                        cAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAATCAATAATCTGATGAGTATTACGCGGATTATTGGttttt                                                                                                  <  1:431784/141‑1 (MQ=255)

                                             atTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattt                                                                                             <  1:554767/141‑1 (MQ=255)

                                             atTCGTATTCCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattt                                                                                             >  2:733059/1‑141 (MQ=255)

                                               tCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATTCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttt                                                                                           <  1:419448/141‑1 (MQ=255)

                                               tCGTAATTCGGTTAGCTGTGTAGAAAAAGAAGATATCCCACCTGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttt                                                                                           <  1:52249/141‑1 (MQ=255)

                                                cGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttta                                                                                          <  2:446332/141‑1 (MQ=255)

                                                 gTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                         <  1:445815/141‑1 (MQ=255)

                                                 gTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGAGAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                         <  1:226544/141‑1 (MQ=255)

                                                       cGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattat                                                                                   <  1:602215/141‑1 (MQ=255)

                                                       cGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCCGATTATTGGTTTTTTATTTTTAAAattat                                                                                   >  1:15678/1‑141 (MQ=255)

                                                           tAGCTGTGTAGAAAAAGAAGATATTCTAAATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                               <  2:697009/141‑1 (MQ=255)

                                                           tAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                               <  1:477275/141‑1 (MQ=255)

                                                           tAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                               >  1:196939/1‑141 (MQ=255)

                                                           tAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATCACTCGGATTATTGCTTTTTTATTTTTAAAATTATTCct                                                                               <  1:496958/141‑1 (MQ=255)

                                                            aGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCctt                                                                              >  1:228322/1‑141 (MQ=255)

                                                             gCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCATTAATCTGATGAGTATGGCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttc                                                                             >  1:225769/1‑141 (MQ=255)

                                                             gCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttc                                                                             <  1:88225/141‑1 (MQ=255)

                                                             gCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttc                                                                             >  1:262394/1‑141 (MQ=255)

                                                               ggtatagtgtttgacaagttgctgaataaaatatatcttatgatcctttgaaagtaggaataattttaaaaatacaaAACCAATAATATGATGAGTTAGACATGGATGAAATGTTTTTAATTTTTAAAATTATTCcttctt                                                                           <  2:644933‑M1/64‑1 (MQ=255)

                                                                gtgtAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCttt                                                                          >  1:665548/1‑141 (MQ=255)

                                                                gtgtAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCttt                                                                          >  1:419664/1‑141 (MQ=255)

                                                                 tgtAGAAAAAGAAGCTATCCCAAATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAAGAATCTGATGAGTATGCCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                         <  1:202188/141‑1 (MQ=255)

                                                                 tgtAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                         <  1:36839/141‑1 (MQ=255)

                                                                 tggagtaaaaGAAGCTATGCCGCATGTATTTGATTCGATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCATTAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTc                                                                         <  2:714364/135‑1 (MQ=255)

                                                                  gtAGAAAAAGAAGATATCCCACCTGGATATCACTCAATTGCTAAAGCGATTGATGACTTAAGATAATTACTTTCAACCAATAATCTGATGAGTATGACGCGGATTATTGGTTTTTCATTTTTAAAATTATTGCTTCTTTCa                                                                        <  2:348649/141‑1 (MQ=255)

                                                                     gAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAACGCGATTGATGACTTAAGATAATTAATTTCCACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAg                                                                     <  2:1637/141‑1 (MQ=255)

                                                                         aagaagATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATc                                                                 >  1:427513/1‑141 (MQ=255)

                                                                         aagaagATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATc                                                                 >  1:32530/1‑141 (MQ=255)

                                                                           gccggtctcgcagaTGTATTTGATTCAATTGCTAAGGCGATTGAGGCCTCATGTTCGTTAATTTCCACCACTAATCTGATGAGTATGACTCGAATTAGTGCTTTTTGGTTTTTAATATTATTCCTTCTTTCTACGTATCAt                                                               >  2:284373/14‑141 (MQ=255)

                                                                           gaagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCAt                                                               >  1:475302/1‑141 (MQ=255)

                                                                           gaagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCAt                                                               >  2:111592/1‑141 (MQ=255)

                                                                            aagaTATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATa                                                              <  1:654391/141‑1 (MQ=255)

                                                                                tatCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGat                                                          >  1:79757/1‑141 (MQ=255)

                                                                                 atCCCACATGTATTTGATTCAATTGATAGTGCCATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTTAAATTATTCTTTCTTTCAAAGTGTCGTTAGatt                                                         >  2:710812/1‑140 (MQ=255)

                                                                                  tCCCACATGTATTTGATTCAATTGCTAAAGCGAATGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatat                                                        >  2:512349/1‑141 (MQ=255)

                                                                                    ctccaTGTATTGGAGTCAATGGCTAAAGCGATTGATGACTTAAGATAATTAATTCCAACCTATAATCTGATGAGTATGTCCCGGATTATTGGGTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatatat                                                      <  1:340085/138‑1 (MQ=255)

                                                                                      acaTGTATGTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATAttt                                                    <  2:121724/141‑1 (MQ=255)

                                                                                          gTATTTGATTCAATTGCTAAAGCGATGGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAtt                                                >  1:405039/1‑141 (MQ=255)

                                                                                             tctGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATGCTTTATTCAg                                             <  1:566850/139‑1 (MQ=255)

                                                                                                  ttCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                        <  2:673681/141‑1 (MQ=255)

                                                                                                   tCAATTGCTAAAGCGATTGATGACTTAAGATAATTATTTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACtt                                       <  1:196618/141‑1 (MQ=255)

                                                                                                   tCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACtt                                       <  1:26077/141‑1 (MQ=255)

                                                                                                     aaTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGt                                     <  2:665339/141‑1 (MQ=255)

                                                                                                     aaTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGt                                     <  1:267519/141‑1 (MQ=255)

                                                                                                         gCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaaa                                 <  1:188534/141‑1 (MQ=255)

                                                                                                          cTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTAACATAAACTCTTTTTTATTCACCACCTTGTCaaaa                                >  1:231413/1‑140 (MQ=255)

                                                                                                           tAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCagaaa                               >  1:253438/1‑137 (MQ=255)

                                                                                                            aaaGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCGACTTGTCAAacac                              >  1:290230/1‑141 (MQ=255)

                                                                                                            aaaGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAacat                              >  2:419819/1‑140 (MQ=255)

                                                                                                              aGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCGTCAACTTGTCAAAAACta                            >  2:376744/1‑141 (MQ=255)

                                                                                                                gaaagaagctattattttaaacataaaaTACTCATCATCTGATGAGTATGCCGCGGATTATTGGTTTTTTATTTTTAAAATTATTCATTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                          >  1:92474‑M1/29‑141 (MQ=255)

                                                                                                                cGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                          <  2:393239/141‑1 (MQ=255)

                                                                                                                aaaagaaggaataattttaaaaataaaaAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                          >  2:92474‑M1/29‑141 (MQ=255)

                                                                                                                  aTTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATAcc                        <  1:741621/141‑1 (MQ=255)

                                                                                                                   ttGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCt                       >  1:674025/1‑141 (MQ=255)

                                                                                                                   ttGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCt                       >  2:721251/1‑141 (MQ=255)

                                                                                                                    tgatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTTTTCAACACTATACCTa                      >  2:392011/1‑141 (MQ=255)

                                                                                                                      atgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCATTCTTTCAAAGTATCATAAGATATATTTTATTCAGGAACTTGTTAAAGATAATACCTAAt                    >  1:58462/1‑141 (MQ=255)

                                                                                                                       tgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt                   <  2:742704/141‑1 (MQ=255)

                                                                                                                          cTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGt                <  1:512349/141‑1 (MQ=255)

                                                                                                                           ttAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGTTTATTGGTTTTTTATTTTTATAATTATTTCTTCTTTCAAAGTATCATTAGATTTATTTTATTTTGCAACTTGTCAAACACTATACCTAATTAGtt               >  2:65363/1‑141 (MQ=255)

                                                                                                                               gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtat           <  2:79757/141‑1 (MQ=255)

                                                                                                                                 taattaatTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACATAATTAGTTTtattc         >  2:773796/1‑139 (MQ=255)

                                                                                                                                      aattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACAtctc    >  2:639425/1‑141 (MQ=255)

                                                                                                                                       attTCAACCAATAATCTGATGAGTATGACTCGGCTTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCTGCAACTTGTTAAACACTATACCTAATTAATTCTCTACAtccta   >  2:125731/1‑138 (MQ=255)

                                                                                                                                        tttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACAtctctc  >  2:494558/1‑141 (MQ=255)

                                                                                                                                        tttCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACAtctctc  <  2:759531/141‑1 (MQ=255)

                                                                                                                                        gagcAACCATTTACCTTATGAGTATGACTCTGATTATTGGTGTTTTATTGTTAAAATTATGCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACAtctctc  <  2:379793/138‑1 (MQ=255)

ATTGAAAAATATTCAATTGGTGTTATTGCACTTAATGCAACAGATATTCGTATTGCGTTTAGCTGTGTAGAAAAAGAAGATATCCCACATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTC  >  CP000730/2082228‑2082504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.