New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 895785 =51 (0.670)10 (0.150) 8/226 NT 18.1% coding (806/822 nt) USA300HOU_0849 ABC superfamily ATP binding cassette transporter, binding protein
?CP000730 = 909740 46 (0.690)intergenic (‑663/‑371) ear/USA300HOU_0868 Ear protein/hypothetical protein

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925
                                                                                                                                            |                                                                                                                                            
ggttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtctggataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                              >  1:673269‑M1/141‑141 (MQ=255)
ggttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                              >  1:46440‑M1/141‑141 (MQ=255)
aaGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGt                                                                                                                                              <  1:136334/141‑1 (MQ=255)
 gttgttttcaagggcaaaaaaagggcataattttgaaacaaggggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatt                                                                                                                                             <  2:216657‑M1/2‑1 (MQ=255)
 aGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGtt                                                                                                                                             <  2:426196/141‑1 (MQ=255)
  ttgttttcaagtgcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccgtgaacttccttgataatctggctaatta                                                                                                                                            <  1:816473‑M1/3‑1 (MQ=255)
  ctgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaatta                                                                                                                                            >  2:860351‑M1/139‑141 (MQ=255)
   tgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaatagtagattatcttgaaaattttataaatgcatatataacaatgttttaattgcccttgaacttccttgatagtctggctaatgat                                                                                                                                           <  1:759223‑M1/4‑4 (MQ=255)
   tgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaattat                                                                                                                                           <  1:382326‑M1/4‑1 (MQ=255)
   tGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGAAGTTAt                                                                                                                                           >  2:714762/1‑141 (MQ=255)
    tttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaattatt                                                                                                                                          >  1:636640‑M1/137‑141 (MQ=255)
      tttcaagggcaaaaaaagggcataattgtgagacaaaggggaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTcc                                                                                                                                        >  2:570787‑M1/135‑141 (MQ=255)
       ttcaagggcaaaaaaagggcaaaattatgaaacaaagggcaagggtataaataatagattagcttgaaaattttataaatgcatatataacaatgttttcattgcccttgaacttccttgataatctggctaaTTATTCCt                                                                                                                                       >  1:117228‑M1/134‑141 (MQ=255)
       aaaGAGTATCCTTAAGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCt                                                                                                                                       <  2:733733/141‑1 (MQ=255)
        aaGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTg                                                                                                                                      <  1:278703/141‑1 (MQ=255)
          aagggcaaaaaaagggcataattttgaaacaaagggcaagggtaggaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCt                                                                                                                                    <  1:515630‑M1/11‑1 (MQ=255)
           agggcaaaaaaagggcataatcttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                   <  1:466642‑M1/12‑1 (MQ=255)
              gcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaat                                                                                                                                <  1:54300‑M1/15‑1 (MQ=255)
              gcaaaaaaagggcataattatgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaat                                                                                                                                >  1:844754‑M1/127‑141 (MQ=255)
               caaaaaaaaggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttcataatctggctaaTTATTCCTGCTAaata                                                                                                                               >  2:837429‑M1/126‑141 (MQ=255)
               aaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaata                                                                                                                               >  2:795801‑M1/126‑141 (MQ=255)
                 cTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCACTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataat                                                                                                                             <  1:623243/141‑1 (MQ=255)
                      gCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCaa                                                                                                                        <  1:82446/141‑1 (MQ=255)
                         aaCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATta                                                                                                                     <  2:487949/141‑1 (MQ=255)
                         aaCATAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATta                                                                                                                     <  2:312537/141‑1 (MQ=255)
                          aCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaa                                                                                                                    <  1:8091/141‑1 (MQ=255)
                             tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaata                                                                                                                 <  1:511167/141‑1 (MQ=255)
                              aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTTTTCCTGCTAAATAATACCAATacaataa                                                                                                                >  1:319073/1‑141 (MQ=255)
                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTCATGAAAAATACAATGGTCCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              >  2:865483/1‑141 (MQ=255)
                                ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                              <  2:142818/141‑1 (MQ=255)
                                        aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAACAATTAAATAAAAATACCCtt                                                                                                      <  1:715302/141‑1 (MQ=255)
                                         aagaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCttt                                                                                                     <  2:243774/141‑1 (MQ=255)
                                           gaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaa                                                                                                   >  1:219639/1‑141 (MQ=255)
                                           gaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaa                                                                                                   <  1:504711/141‑1 (MQ=255)
                                              ggACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATCAAAATACCCTTtaataa                                                                                                >  1:421728/1‑141 (MQ=255)
                                              ggACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaataa                                                                                                >  2:888805/1‑141 (MQ=255)
                                                  aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCCATTAAATAAAAATACCCTTTAATaacaac                                                                                            >  1:148403/1‑141 (MQ=255)
                                                  aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaac                                                                                            >  2:303078/1‑141 (MQ=255)
                                                   tCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACg                                                                                           >  2:181022/1‑141 (MQ=255)
                                                             aaGAAAATCAAAGCATTACTTGAAGTATTACAATCTAAAGATATTCAAAACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAAAAACGATTAATGGGt                                                                                 >  2:56872/1‑141 (MQ=255)
                                                             aaGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCACGACTACATTAATAAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 >  2:327412/1‑141 (MQ=255)
                                                             aaGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                 <  2:782908/141‑1 (MQ=255)
                                                              aGAAAAACAAAGCATTAATAGAAGAATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                                <  1:869073/141‑1 (MQ=255)
                                                               aattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCGATTAAATAAAAATACCCTTTAATAACACCGATTAAGGGGTTa                                                                               <  1:81497‑M1/64‑1 (MQ=255)
                                                               aattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                               >  1:480600‑M1/78‑141 (MQ=255)
                                                                attatttttaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAt                                                                              >  2:37825‑M1/77‑141 (MQ=255)
                                                                               aTTGAAGTATTACAACCTAAAGATATGCAAGACTGCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCTATTAAATAAAAATACCCTTTAATAACAACGATTAAGGAGTTATTTTTGTGGTATTGaa                                                               <  1:550868/141‑1 (MQ=255)
                                                                                             ataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCACTTAAATAAAAATACCCTTTAATAATAACGATTAAGGGGTTATTTTTTTGGTATTGAAACAAAAAAAGAGca                                                 <  1:832159‑M1/94‑1 (MQ=255)
                                                                                               cTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               <  1:148750/141‑1 (MQ=255)
                                                                                               aacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                               <  2:663795‑M1/96‑1 (MQ=255)
                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  2:466642‑M1/43‑141 (MQ=255)
                                                                                                  aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGGGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  2:382326‑M1/43‑141 (MQ=255)
                                                                                                  aatattttgattgcccttgaacttccttgataatctggctaaGTATTCCTGCTAAATAATACGAATTAAATAAAAATACCCTTTAACAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                            >  2:759223‑M1/43‑141 (MQ=255)
                                                                                                     atatTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAggg                                         <  1:513519/141‑1 (MQ=255)
                                                                                                       atTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATACCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACAATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGAGCACAAAAGGGGc                                       >  2:862868/1‑141 (MQ=255)
                                                                                                        ttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCa                                      <  2:787413‑M1/105‑1 (MQ=255)
                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAACAAGGGCACAAAAGGGGCAGt                                    >  1:533823/1‑141 (MQ=255)
                                                                                                          cAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                    >  2:606597/1‑141 (MQ=255)
                                                                                                           aaGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGta                                   >  2:342108/1‑141 (MQ=255)
                                                                                                           aaGACTTCATAAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGta                                   >  2:615951/1‑141 (MQ=255)
                                                                                                            aGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAGATAAAAATACCCTTTAATAACAACGATTCAGGGGTTATGTTTGTGGTATTGAAAATAAAAACGGGCACAAATGGGGCAGttt                                  >  1:548252/1‑139 (MQ=255)
                                                                                                            aGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCCGtat                                  >  2:57497/1‑141 (MQ=255)
                                                                                                            aGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATAGAAAATAAAAAAGGGCACAAAAGGGGCAGtat                                  >  1:800314/1‑141 (MQ=255)
                                                                                                               cTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATg                               <  1:659800/141‑1 (MQ=255)
                                                                                                               cTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATg                               <  1:311713/141‑1 (MQ=255)
                                                                                                               cTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATg                               <  1:869917/141‑1 (MQ=255)
                                                                                                               attgaTTAATGAAAAATAGAATGGTGCAGTTATTCCTGCTAAATAATACAAATTAAATAAAAATATTAGTTAAGAAGCACGTGTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATg                               <  2:780450/137‑1 (MQ=255)
                                                                                                                ttCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATTCCTATTAAATAAGAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGc                              <  2:152591/141‑1 (MQ=255)
                                                                                                                   aTTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaaa                           >  2:814087/1‑141 (MQ=255)
                                                                                                                    ttAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                          >  1:181714/1‑141 (MQ=255)
                                                                                                                       aTGAAAAATACAATAGTGCAGTTATTCCTGCTAAATAATACCAATAAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTAt                       <  1:736187/141‑1 (MQ=255)
                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCg                     <  1:816649/141‑1 (MQ=255)
                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCg                     <  1:354881/141‑1 (MQ=255)
                                                                                                                         gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCg                     <  1:199981/141‑1 (MQ=255)
                                                                                                                         caaaatggtaaTGGTGCGGTTATTCCTGCTAAATAATACCAATTAAATAAAGATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCg                     <  2:224932/132‑1 (MQ=255)
                                                                                                                         aaaaaaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCg                     <  1:200232/140‑1 (MQ=255)
                                                                                                                              aTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAACAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAttt                >  1:624555/1‑141 (MQ=255)
                                                                                                                              aTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGCATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAGttt                >  1:62757/1‑141 (MQ=255)
                                                                                                                                taatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTa              <  2:350327‑M1/129‑1 (MQ=255)
                                                                                                                                    tGGTTCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAACACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACa          <  1:54083/141‑1 (MQ=255)
                                                                                                                                     tggctaattATTCCTGCTAAATAATACCAATTAAATAAAAATAACCTTTAATAACATCTAGTAAGGGTCTTTTTTTATGCTCTCATGAGGAAAAAAGATGACAAAAGGGGCAGTATATGCAAATTAAAGAATTTTAAACaa         >  2:642171/8‑141 (MQ=255)
                                                                                                                                       tGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTaaaacaaa       >  2:627378/1‑136 (MQ=255)
                                                                                                                                          aGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACaaaaaaa    >  2:318826/1‑141 (MQ=255)
                                                                                                                                          aGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAATATCGAATTTTAAACaaaaaaa    >  2:659119/1‑141 (MQ=255)
                                                                                                                                          aGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGGTATTTTTGTGGTATTGAAAATAAAAAACGGCACAAAAGGCCCACTATATGCAAATGACAGAAATTTAAACaaaaaaa    >  1:195610/1‑141 (MQ=255)
                                                                                                                                            TTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATa  <  1:347532‑M1/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATA  >  CP000730/895645‑895925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.