| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 782423 | 79 (0.770) | 3 (0.030) | 3/240 | NT | 3.8% | intergenic (‑218/+124) | USA300HOU_0730/USA300HOU_0731 | hypothetical membrane protein/hypothetical lipoprotein |
| ? | CP000730 | = 782442 | 79 (0.830) | intergenic (‑237/+105) | USA300HOU_0730/USA300HOU_0731 | hypothetical membrane protein/hypothetical lipoprotein | |||||
TTTGTAGTGTTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/782274‑782423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgatttcACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCATGAGC < CP000730/782442‑782306 TTTGTAGTGTTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAG > 1:361882/1‑141 TAGTGTTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATG > 1:129804/1‑141 TTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCGTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTC > 2:128189/1‑141 CTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTGGAAATAATAATTTCCTTTTTTCCATATATAAACAACTGTT > 2:813497/1‑141 GGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATAATACTTTCCTTTTTTCAATATATATACAACTATTAAATCACATAAGATTCCGAAGCACATAAATAAATTT > 2:760581/1‑141 AATAGTTGTATATTTAGTGAAAAAAGGAAAGTATGATTCCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTCCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAG < 1:813497/141‑1 GTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCC > 1:399782/1‑141 GTATGATTTCACAGCCACCCTAGCTTGTCGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTCTTCGTGCTTGAGGTTTGTTTAGCTTAGGCAACCC > 1:614383/1‑141 TATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAAAGCTTGAGGTTGGTTTAGATTAAGCAACCCA > 1:505562/1‑141 ATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCAT < 1:340707/141‑1 TGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCATG > 1:52245/1‑141 GATTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGCGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCATGA < 1:1124477/141‑1 TTTCACCGCCCCCCTAGCTTGTAGAAACCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCATGAGC < 2:61408/141‑1 TTTCACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCATGAGC < 1:791451/141‑1 TTTGTAGTGTTATGTGAACAGGAAGTGTTTGAGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/782274‑782423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatgatttcACAGCCCCCCTAGCTTGTAGAAATCATACTTTCCTTTTTTCAATATATATACAACTATTAAATCCCATAAGATTGCAGAGCACATAAGTAAATTTTTTTAGAGCTTGAGGTTTGTTTAGCTTAAGCAACCCATGAGC < CP000730/782442‑782306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |