BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 782423	79 (0.770)	3 (0.030)	3/240	NT	3.8%	intergenic (‑218/+124)	USA300HOU_0730/USA300HOU_0731	hypothetical membrane protein/hypothetical lipoprotein
*	?	CP000730	= 782442	79 (0.830)	3 (0.030)	3/240	NT	3.8%	intergenic (‑237/+105)	USA300HOU_0730/USA300HOU_0731	hypothetical membrane protein/hypothetical lipoprotein

Only 100 of 105 total aligned reads displayed.

TTATGTGAACAGGAAGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGC  >  CP000730/782283‑782561

ttATGTGAACAGGAAGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCGTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTC                                                                                                                                            >  2:128189‑M1/1‑141 (MQ=255)

  aTGTGAACAGGAAGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTa                                                                                                                                          >  1:960510/1‑141 (MQ=255)

   agtgAACGGGAA‑TGTTTGAAGCTTATGGGTTGCTAAAGCTAAACAAACCTCAAGGTAAGAAAAAATTTACTTATGTGCTCTGCAATCTTATGTGATGTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTAc                                                                                                                                         <  2:788773/140‑1 (MQ=255)

      gAACAGGAAGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAg                                                                                                                                      >  2:862353/1‑141 (MQ=255)

       aaCAGGAAGTATTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTCCTACAAGc                                                                                                                                     >  2:354613/1‑141 (MQ=255)

         cAGGAAGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCtg                                                                                                                                   >  1:441305/1‑140 (MQ=255)

           ggAAGTGGTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgg                                                                                                                                 <  2:892054/141‑1 (MQ=255)

              aGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAggggg                                                                                                                              >  1:442321/1‑141 (MQ=255)

               atgtTTG‑AGCTCATGGGTTGCCTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAgggggg                                                                                                                             <  2:1171180/140‑1 (MQ=255)

                tgtTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGc                                                                                                                            <  1:350940/141‑1 (MQ=255)

                tgtTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGc                                                                                                                            <  1:350485/141‑1 (MQ=255)

                  tttG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATCTGCTCTGCAATCTTATGGGCTTTAATAGTTGTATATATATTGAAAAGAGGAATTAATGATTTCTACAGGCAAGGGTGGcgg                                                                                                                          >  2:1046779/1‑139 (MQ=255)

                   ttG‑AGCTGATGGGTTGATAAAACAAAACAAAACACAACCTCTAAAAAAATTTACTTATGTGCTCTGAAATCTTATGGGATTTAATAGTTGAAAAAAAAAAAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCtgt                                                                                                                         <  2:678485/141‑1 (MQ=255)

                   ttG‑AGCTCATGGGTTGCTTAAGCAAAACAAACCTTCTGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGAGTTAATAGTTGTATATATATTGAAAAAAGTAAAGTATGATTTCTACAAGCTAGGGGGGCtgt                                                                                                                         <  1:228732/141‑1 (MQ=255)

                        gCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGGTTTCTACAAGCTAGGGGGGCGGTgaaa                                                                                                                     <  2:61408‑M2/141‑5 (MQ=255)

                        gCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaa                                                                                                                     <  1:791451‑M2/141‑5 (MQ=255)

                          tCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCGCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatc                                                                                                                   <  1:1124477‑M2/141‑7 (MQ=255)

                           cATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatca                                                                                                                  >  1:52245‑M2/1‑134 (MQ=255)

                            aTGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcat                                                                                                                 <  1:340707‑M2/141‑9 (MQ=255)

                             tGGGTTGCTTAATCTAAACCAACCTCAAGCTTTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcata                                                                                                                >  1:505562‑M2/1‑132 (MQ=255)

                              gggTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTgaaatcatac                                                                                                               >  1:399782‑M2/1‑131 (MQ=255)

                              gggTTGCCTAAGCTAAACAAACCTCAAGCACGAAGAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCGACAAGCTAGGGTGGCTGTgaaatcatac                                                                                                               >  1:614383‑M2/1‑131 (MQ=255)

                               ggTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                                              <  2:494305/141‑1 (MQ=255)

                               ggTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                                              <  1:937076/141‑1 (MQ=255)

                                 ttGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCt                                                                                                            <  1:509308/141‑1 (MQ=255)

                                     ttAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTCGGGGGGCTGTGAAATCATACGCTTTcc                                                                                                        >  1:192229/1‑141 (MQ=255)

                                      tAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                                                                       <  1:120318/141‑1 (MQ=255)

                                        aGCGAAACAAACCTCAAGCTTGAAAAAAATTTACCTATTTGCTCTTCAAGCTTCTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGTTAGGGGGGCTGTGAAATCATACGCTTTCCCtt                                                                                                     <  2:334070/141‑1 (MQ=255)

                                          cTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                                                                   >  1:360471/1‑141 (MQ=255)

                                           caaataaacCTCCAGCCCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGGATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                                                  <  1:510467/140‑1 (MQ=255)

                                              acaaacCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTTAAATCATACGCTTTCCATTGAGTaa                                                                                               >  1:501816/1‑141 (MQ=255)

                                              acaaacCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTaa                                                                                               <  1:587311/141‑1 (MQ=255)

                                              acaaacCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTaa                                                                                               >  2:201260/1‑141 (MQ=255)

                                              aaaaaatcaaaGTTCCAAAAGCATTTACTTCTGTGCTAAGCAATCTAGTGGGAATTAATAGATGTATATATATTGAAAAAAGGAAAGTATGGATTCTACAAGCTAGGGAGGCAGTGAAATCATGCGCTTTCCATAGCGTaa                                                                                               >  2:141465/10‑141 (MQ=255)

                                                  acCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAg                                                                                           <  2:361882/141‑1 (MQ=255)

                                                      cAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTa                                                                                       >  1:651466/1‑141 (MQ=255)

                                                        aGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAAt                                                                                     >  1:946208/1‑141 (MQ=255)

                                                        aGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAAGGGGTGTAAt                                                                                     >  1:1049689/1‑141 (MQ=255)

                                                          ctctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                                                                   <  1:955390/141‑1 (MQ=255)

                                                           tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGta                                                                                  >  1:305515/1‑141 (MQ=255)

                                                           tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGta                                                                                  >  1:260744/1‑141 (MQ=255)

                                                           tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGta                                                                                  >  1:260263/1‑141 (MQ=255)

                                                           tctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGta                                                                                  >  1:669224/1‑141 (MQ=255)

                                                            ctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGGAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTggaatcatactttccttttttcactaaatatacaactatt                                                                                 <  1:813497‑M2/141‑41 (MQ=255)

                                                            ctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCacagcccccctagcttgtggaaataataatttccttttttccatatataaacaactgtt                                                                                 >  2:813497‑M1/1‑82 (MQ=255)

                                                            ctAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtat                                                                                 >  1:1112581/1‑141 (MQ=255)

                                                               aaaaaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTTTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAAAGTATAtt                                                                              >  2:6154/1‑141 (MQ=255)

                                                                aaaaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATAAATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                                             <  2:44632/141‑1 (MQ=255)

                                                                aaaaaTTTACTTACGTGCTCTGCAATCTTATGGGATTTAATAGTTGTAAATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                                             <  2:675091/141‑1 (MQ=255)

                                                                aaaaaTTGATTTATGTGCTCTGCAATCTTATGGGATTTAAAAGATGTAAAAAAAAAAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                                             <  1:1134358/141‑1 (MQ=255)

                                                                aaaaaGTTACTTATGTGCTCTGCAATATTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                                             <  1:1139526/141‑1 (MQ=255)

                                                                  aaaTTTATTTATGTGCTTCGGAATCTTATGTGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATTATTTCTACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaactattaaatcc                                                                           >  2:760581‑M2/1‑95 (MQ=255)

                                                                  aaaTTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGAAAAAAAAAAAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTa                                                                           <  2:860928/141‑1 (MQ=255)

                                                                      taaCTTATGTGCTCTGCAATCTGATGGGATTTAATAGTAGAAAAAAAAAAAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaaaaa                                                                       <  2:467557/139‑1 (MQ=255)

                                                                        aCTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAtt                                                                     <  2:1112581/141‑1 (MQ=255)

                                                                         cTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAttt                                                                    <  2:340707/141‑1 (MQ=255)

                                                                            aTGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                                                                 >  1:981035/1‑141 (MQ=255)

                                                                            aTGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTa                                                                 >  1:708346/1‑141 (MQ=255)

                                                                               tgCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                                              >  2:172880/1‑141 (MQ=255)

                                                                                gCTCTGCAATTTTATGCGACTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                                             <  1:763512/141‑1 (MQ=255)

                                                                                 ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGta                                                            <  2:613643/141‑1 (MQ=255)

                                                                                   ctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTCGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtata                                                          >  1:343794/1‑141 (MQ=255)

                                                                                       aaTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGCGTGTAATGTATATTTTAAAAATTTGTAAAGTatagtaa                                                      >  1:1126185/1‑141 (MQ=255)

                                                                                       aaTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                                                      >  1:766643/1‑141 (MQ=255)

                                                                                            tATGGGATTTAATAGGTGTAAAAAAAAAAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                                                 <  2:22607/141‑1 (MQ=255)

                                                                                            tATGGGATTATATAGTTAGAAAAAAAATAAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAGTTGTAATGTatagtaatagta                                                 <  2:822444/141‑1 (MQ=255)

                                                                                            aaagagATTTAAAAGTTGTAAAAAAAAAGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                                                 <  2:518909/136‑1 (MQ=255)

                                                                                             aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGCAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAACTTGTAATGTATAGTAATAGTAt                                                >  1:829341/1‑141 (MQ=255)

                                                                                              tGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtg                                               >  1:1167506/1‑141 (MQ=255)

                                                                                               gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgt                                              <  2:240390/141‑1 (MQ=255)

                                                                                                ggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCacagcccccctagcttgtagaaataatactttccttttttcaatatatatacaactattaaatcacataagattccgaagcacataaataaattt                                             >  2:760581‑M1/1‑46 (MQ=255)

                                                                                                   tttAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGta                                          >  1:1097121/1‑141 (MQ=255)

                                                                                                     tAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGAGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa                                        >  2:716305/1‑141 (MQ=255)

                                                                                                      aaTAGTTGTATATTTAGTGAAAAAAGGAAAGTATGATTCCacagcccccctagcttgtagaaatcatactttcctttttccaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttag                                       <  1:813497‑M1/141‑102 (MQ=255)

                                                                                                      aaCAGTTGTTTATATATGGAAAAAAGGAAATTATTATTTCCACAAGCTAGGGGGGCTGTgaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttag                                       >  2:813497‑M2/1‑59 (MQ=255)

                                                                                                       aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                                      >  2:742170/1‑141 (MQ=255)

                                                                                                           ttGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCCGTGCATTCCTACGCATTCCAGTGAGTAATGTGTGTCATGTATATTTTAAAAATTTGTTATGTATAGTAATAGTAGGTTGTAAATAAAAg                                  >  2:298596/1‑141 (MQ=255)

                                                                                                                tatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTTTAGTATTAGTATTTTGTAAATAAAAGTTTaa                             >  2:536723/1‑141 (MQ=255)

                                                                                                                 ataacttGAAAAAAGGAAAGTATGATCTATACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTGAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAAc                            <  2:192618/136‑1 (MQ=255)

                                                                                                                     atagAAAAAAGGAAAGGATGATTTCTACAAGGTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGCATATTTTAAAAATTTGTAATGGATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAg                        <  1:1060917/138‑1 (MQ=255)

                                                                                                                     atTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAg                        <  1:1108199/141‑1 (MQ=255)

                                                                                                                      ttGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAAGTCAGa                       >  2:871524/1‑141 (MQ=255)

                                                                                                                       tGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAGTGTATAGTAATAGTATGTTGTAAATATAGGTTTAAATCAGaa                      >  2:935308/1‑141 (MQ=255)

                                                                                                                       tGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGaa                      <  1:821506/141‑1 (MQ=255)

                                                                                                                          aaaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAAtt                   <  1:742170/141‑1 (MQ=255)

                                                                                                                                  aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTAttt           >  1:444064/1‑141 (MQ=255)

                                                                                                                                  aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTAttt           >  1:22705/1‑141 (MQ=255)

                                                                                                                                  aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTAttt           >  2:747659/1‑141 (MQ=255)

                                                                                                                                  aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCAATTGAGTAATGAGGGTAATGCATATTTTAAAAATGTGTAAGGTATAGTAATAGTATGTTGTAAATAAAAGTTAAACTCCGAAATTGATTAttt           >  1:236488/1‑141 (MQ=255)

                                                                                                                                  aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTATCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAACAAAAGTTTAACTCAGAAACAAATTAttt           >  1:934719/1‑141 (MQ=255)

                                                                                                                                    gTATGATTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttagagcttgaggtttgtttagcttaagcaaccc         >  1:399782‑M1/1‑10 (MQ=255)

                                                                                                                                    gTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTa         >  1:1168712/1‑141 (MQ=255)

                                                                                                                                     tATGATTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttaaagcttgaggttggtttagattaagcaaccca        >  1:505562‑M1/1‑9 (MQ=255)

                                                                                                                                      aTGATTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttagagcttgaggtttgtttagcttaagcaacccat       <  1:340707‑M1/141‑134 (MQ=255)

                                                                                                                                       tGATTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttagagcttgaggtttgtttagcttaagcaacccatg      >  1:52245‑M1/1‑7 (MQ=255)

                                                                                                                                       tGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAAtt      <  2:1174267/141‑1 (MQ=255)

                                                                                                                                        gATTTCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagcgcacataagtaaatttttttagagcttgaggtttgtttagcttaagcaacccatga     <  1:1124477‑M1/141‑136 (MQ=255)

                                                                                                                                          tttCaccgcccccctagcttgtagaaaccatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttagagcttgaggtttgtttagcttaagcaacccatgagc   <  2:61408‑M1/141‑138 (MQ=255)

                                                                                                                                          tttCacagcccccctagcttgtagaaatcatactttccttttttcaatatatatacaactattaaatcccataagattgcagagcacataagtaaatttttttagagcttgaggtttgtttagcttaagcaacccatgagc   <  1:791451‑M1/141‑138 (MQ=255)

                                                                                                                                           ttCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAgc  >  1:1100277/1‑141 (MQ=255)

TTATGTGAACAGGAAGTGTTTG‑AGCTCATGGGTTGCTTAAGCTAAACAAACCTCAAGCTCTAAAAAAATTTACTTATGTGCTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGC  >  CP000730/782283‑782561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.