New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2257232 =83 (0.800)4 (0.040) 3/248 NT 5.0% coding (293/414 nt) USA300HOU_2129 hypothetical protein
?CP000730 2257282 = 74 (0.750)coding (243/414 nt) USA300HOU_2129 hypothetical protein

GCAAATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2257377‑2257232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTC  >  CP000730/2257282‑2257416
                                                                                                                                                                                                                                                                                         
GCAAATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGT                                                                                                                                              >  2:1144100/1‑141
 CAAATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAGCCAGTCCGTA                                                                                                                                             >  1:716/1‑141
 CAAATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTA                                                                                                                                             >  2:764565/1‑141
  AAATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCGTGTACCTATACCAGTCCGTAA                                                                                                                                            <  1:618476/141‑1
    ATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTAATT                                                                                                                                          >  2:650073/1‑141
                                                                                               TAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTT                                               >  2:409864/1‑141
                                                                                                     ATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGC                                         >  1:172072/1‑141
                                                                                                     ATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGC                                         >  1:720284/1‑141
                                                                                                                                TAAACCAGTCCGTAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTG              <  1:409864/141‑1
                                                                                                                                            TAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTC  >  2:473523/1‑141
                                                                                                                                                                                                                                                                                         
GCAAATAAAAATAGTGTGATTTTACAGAAAGGTGATCGTATATATTTTGAATCGCAGGCGATTATTAAACTAATCACAGCACTACCTAATCGAACTAAATTATTGGGCGTAGGTTTATGGCTTGTACCTAAACCAGTCCGTAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2257377‑2257232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTC  >  CP000730/2257282‑2257416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.