New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2257232 =83 (0.800)4 (0.040) 3/248 NT 5.0% coding (293/414 nt) USA300HOU_2129 hypothetical protein
?CP000730 2257282 = 74 (0.750)coding (243/414 nt) USA300HOU_2129 hypothetical protein

TCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTCACCTTT  >  CP000730/2257142‑2257422
                                                                                                                                            |                                                                                                                                            
aaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTa                                                                                                                                              >  2:409864‑M1/91‑141 (MQ=255)
  tAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTCTTATTAGCAAACATTCGATAACCGCAATTACGGACTGGTTTAGGTACAAGCCATTAACCTACGGCCAATAATTTatt                                                                                                                                            >  1:356991/1‑139 (MQ=255)
      aaGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGa                                                                                                                                        >  2:1112811/1‑141 (MQ=255)
          aCGATTTTTCTTTTTTTTTTGGTTGGTGCCATGTTGTTTTCCACAATCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTAGATTAGGTACAAGCCATAAACTTACGCCCAATAATTTAGTTCTATTAg                                                                                                                                    >  2:364822/1‑141 (MQ=255)
           cgttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                                                                                   <  2:942079/138‑1 (MQ=255)
           cGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                                                                                   <  2:1153154/141‑1 (MQ=255)
            gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGt                                                                                                                                  <  1:674963/141‑1 (MQ=255)
            gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATCTAAAATATTAGCAAACATTCGATAACCGAAATTACGGACAGGTTTAGGTACAAGCCATAAACCTAAGCCCAATAATTTGGTTCGATTAgtt                                                                                                                                  >  1:102318/1‑139 (MQ=255)
             ttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTTGATAACCGAAATGACGTACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTa                                                                                                                                 <  2:52741/140‑1 (MQ=255)
              tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                <  1:98721/141‑1 (MQ=255)
              tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                >  1:1186283/1‑141 (MQ=255)
              tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                >  1:691279/1‑141 (MQ=255)
              tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                                                                                <  2:660917/141‑1 (MQ=255)
                     tAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGACCAATAATTTAGTTCGATTAGGTAGTGCtgtg                                                                                                                         >  1:808931/1‑141 (MQ=255)
                      taTCATTTGGTTGGTGGCATGTTGTTTGCCACATTCTATTTCTATTAATAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGa                                                                                                                        <  1:119868/140‑1 (MQ=255)
                           tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                                                                                   >  1:417873/1‑141 (MQ=255)
                           tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                                                                                   >  1:216821/1‑141 (MQ=255)
                           tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                                                                                   >  2:1045026/1‑141 (MQ=255)
                                  ggtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAGTAATTTAGTTCGATTAGGTGGTGCTGTGATTAGTGtaataa                                                                                                            >  2:1119338/1‑141 (MQ=255)
                                   gtaccATGTTGTTTCCCACAGTCTATTTCTATAATTAGCAAACATTCGATAACCGAAATTACTGACCGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                                                                           <  2:356991/138‑1 (MQ=255)
                                   gtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                                                                           <  1:1067945/141‑1 (MQ=255)
                                    tGCCGTGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATc                                                                                                          >  2:80083/1‑141 (MQ=255)
                                      ccATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGc                                                                                                        <  1:17741/141‑1 (MQ=255)
                                       cATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGcc                                                                                                       >  2:198339/1‑141 (MQ=255)
                                         tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                                                                     <  1:1095178/141‑1 (MQ=255)
                                         tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                                                                     <  1:603541/141‑1 (MQ=255)
                                          tttgttTTCCACATTCTATTTCTATTCTTACAAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAAACTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGTTTATTTTAATAATCGCCTGc                                                                                                    <  1:288896/140‑1 (MQ=255)
                                           ttgttCTCCACATTCGATTTCTGTTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCg                                                                                                   <  2:123221/141‑1 (MQ=255)
                                              ttctCCACATTCGTTTTCTATAATCAGCAAACAGTCTATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCTAATAATTTAGTTCCATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGAtt                                                                                                <  2:43676/138‑1 (MQ=255)
                                                ttCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCa                                                                                              <  2:1186283/141‑1 (MQ=255)
                                                    acaTTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGTTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAat                                                                                          >  2:372775/1‑141 (MQ=255)
                                                       ttctatttctatTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatata                                                                                       >  2:1122661/1‑141 (MQ=255)
                                                        tctatctctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatatat                                                                                      <  2:871791/141‑1 (MQ=255)
                                                           atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                                                                                   >  1:833864/1‑141 (MQ=255)
                                                           atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                                                                                   >  1:699525/1‑141 (MQ=255)
                                                           atttctattATTAGCAAAAATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                                                                                   <  2:245958/141‑1 (MQ=255)
                                                                 attattAGCAAACATTCGATGACGGAAATTGCGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATGCGATGAcc                                                                             >  2:966108/1‑141 (MQ=255)
                                                                 attattAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCAcc                                                                             >  1:504745/1‑141 (MQ=255)
                                                                  ttattaGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACACGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTCGTTTAATAATCGCCTGTGATTCACAATAGTTACGATCGCCt                                                                            >  2:1099920/1‑141 (MQ=255)
                                                                       tgCAAACATTCGATAACCGAATTTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTTATTATTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                                                                       <  2:962301/140‑1 (MQ=255)
                                                                       aGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                                                                       >  1:1191607/1‑141 (MQ=255)
                                                                        tcAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGt                                                                      <  2:1198991/140‑1 (MQ=255)
                                                                        gccaaCATTCGATAACCGAAATGACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCAcagcactac                                                                      <  2:927627/138‑9 (MQ=255)
                                                                         cAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATAACCTGGCATTAAAATTAGATAAGactcaattcctcta                                                                     >  1:1170392/1‑128 (MQ=255)
                                                                         cAAACATTCGATAACCGAAAATACGGACTGGTTTAGGTACAAGCTATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCAGAGATTAGTTTAATAATCGCCGGCGATTCAAAATATATACGATCACCTTTCTGTa                                                                     >  2:654469/1‑141 (MQ=255)
                                                                          aaaCATTCGATAACCGAAATTACGGACTTGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                                                                    <  2:934052/141‑1 (MQ=255)
                                                                          aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                                                                    <  1:261428/141‑1 (MQ=255)
                                                                          aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                                                                    <  2:685254/141‑1 (MQ=255)
                                                                                tCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCGTTCTGTAAAAtaaa                                                              >  1:40776/1‑138 (MQ=255)
                                                                                 cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca                                                             >  1:803211/1‑141 (MQ=255)
                                                                                 cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca                                                             >  1:132303/1‑141 (MQ=255)
                                                                                  gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac                                                            >  2:1075511/1‑141 (MQ=255)
                                                                                  gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac                                                            >  2:1075524/1‑141 (MQ=255)
                                                                                      aCCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtt                                                        <  1:800968/141‑1 (MQ=255)
                                                                                        cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGGCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt                                                      >  1:819011/1‑141 (MQ=255)
                                                                                        cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt                                                      >  1:1055641/1‑141 (MQ=255)
                                                                                        cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt                                                      <  1:641620/141‑1 (MQ=255)
                                                                                         taaattattgggcgtaggtttatggcttgtacctaaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAttttt                                                     >  2:409864‑M2/52‑141 (MQ=255)
                                                                                           AATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTAt                                                   >  2:650073‑M1/1‑141 (MQ=255)
                                                                                             TTACGGACTGGTATAGGTACACGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTAttt                                                 <  1:618476‑M1/141‑1 (MQ=255)
                                                                                              TACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTg                                                >  2:764565‑M1/1‑141 (MQ=255)
                                                                                              TACGGACTGGCTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTg                                                >  1:716‑M1/1‑141 (MQ=255)
                                                                                               attgggcgtaggtttatggcttgtacctaaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGc                                               >  1:720284‑M2/46‑141 (MQ=255)
                                                                                               attgggcgtaggtttatggcttgtacctaaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGc                                               >  1:172072‑M2/46‑141 (MQ=255)
                                                                                               ACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGc                                               >  2:1144100‑M1/1‑141 (MQ=255)
                                                                                                cGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGcc                                              >  2:572354/1‑141 (MQ=255)
                                                                                                 ggtcTGGTTCAGGTACCAGCCATCAACCTACGCCCCATAATTTAGTGCGAGTCGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGCTTCTTAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCg                                             <  1:398605/138‑1 (MQ=255)
                                                                                                 ggACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATGAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGccc                                             >  2:252725/1‑140 (MQ=255)
                                                                                                    cTGGTTTAGGTACAAGCCATAACCCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCtt                                          <  1:763446/141‑1 (MQ=255)
                                                                                                       gTTTAGGTACAAGCCATAAATCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTg                                       <  1:866453/141‑1 (MQ=255)
                                                                                                       gTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTg                                       <  1:842191/141‑1 (MQ=255)
                                                                                                        tttAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTgg                                      <  1:1112811/141‑1 (MQ=255)
                                                                                                                  aGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTa                            <  1:1045026/141‑1 (MQ=255)
                                                                                                                   cccACAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTaa                           <  2:821149/140‑1 (MQ=255)
                                                                                                                       tcaagctgtgCCCGATAATGTGGTTCGATTAGGTAGTGCTGTGATTAGATTAATAATAGCCTGCGATTAAAAATATATACGATCACCTTTCTGTAAAATTACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTacaaaa                       >  2:437814/10‑141 (MQ=255)
                                                                                                                       tAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTaaaaaa                       >  2:209663/1‑141 (MQ=255)
                                                                                                                       tAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTaaaaaa                       <  1:1083017/141‑1 (MQ=255)
                                                                                                                       tAAACCTACGCCCAATAATTTAGTACGTGTAGGTAGTGCTGTGATGAGATTAATAATCGCCTGCGGTTCAAAAAAGATACGATCACCTTTGTGTAAAATCACACTAGTTTTATTCGCCGGTTCTGGGGGTTGGTTtaaata                       >  2:154855/1‑139 (MQ=255)
                                                                                                                         aaCCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAtt                     >  1:488445/1‑141 (MQ=255)
                                                                                                                          taaaccagtccgtaatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAttg                    <  1:409864‑M2/123‑1 (MQ=255)
                                                                                                                          aCCTACGACCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAttg                    <  2:753972/141‑1 (MQ=255)
                                                                                                                             tACGCCCAATAATTTAGTTCGATTAGGTAGTTCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGTTGTTGTTTAAAAAAttgttg                 <  1:728070/141‑1 (MQ=255)
                                                                                                                             tACGCCCAATAATTTAGTGCGATTATGTATTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAAttgttg                 <  1:559798/141‑1 (MQ=255)
                                                                                                                               cGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGc               >  1:1128699/1‑141 (MQ=255)
                                                                                                                                gCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGcc              <  1:1125466/141‑1 (MQ=255)
                                                                                                                                ccccAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGcc              <  1:42019/140‑1 (MQ=255)
                                                                                                                                ccccAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGcc              <  2:177564/140‑1 (MQ=255)
                                                                                                                                   cAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAACATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAAc           <  2:962198/141‑1 (MQ=255)
                                                                                                                                   cAATAATTTAGTGCGATCAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTTAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAAc           <  2:229879/141‑1 (MQ=255)
                                                                                                                                     ataatTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACtt         >  2:988143/1‑141 (MQ=255)
                                                                                                                                      taatttAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTc        >  2:473523‑M2/7‑141 (MQ=255)
                                                                                                                                            aGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTCACCttt  <  2:1170392/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTTTATTTGCCGCTTCTGGATGTTGTTTAAAAAATTGTTGGCCAACTTCACCTTT  >  CP000730/2257142‑2257422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.