New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2257232 =83 (0.800)4 (0.040) 3/248 NT 5.0% coding (293/414 nt) USA300HOU_2129 hypothetical protein
?CP000730 2257282 = 74 (0.750)coding (243/414 nt) USA300HOU_2129 hypothetical protein

AATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTT  >  CP000730/2257092‑2257370
                                                                                                                                            |                                                                                                                                          
aaTTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAACAATTCGATAACCGa                                                                                                                                            >  2:771142/1‑141 (MQ=255)
 aTTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGaa                                                                                                                                           >  1:456461/1‑141 (MQ=255)
 aTTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGaa                                                                                                                                           <  2:424437/141‑1 (MQ=255)
 aTTAGCAAGGATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGaa                                                                                                                                           >  1:877642/1‑141 (MQ=255)
  ttAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTCTTTCTATTATTAGCAAACATTCGGTGACGGaaa                                                                                                                                          >  1:229879/1‑141 (MQ=255)
  ttAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATAATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGACATGTTGTTTTCCACATCATATTTCTATTATTCGCAAACCTTCGATACCAGaac                                                                                                                                          >  2:588559/1‑140 (MQ=255)
     gaagttggccaacaattttttaaacaacatccagaagcggcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTa                                                                                                                                       >  2:473523‑M1/136‑141 (MQ=255)
     gCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTa                                                                                                                                       <  1:478895/141‑1 (MQ=255)
     gCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTa                                                                                                                                       <  1:1049934/141‑1 (MQ=255)
         gTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACTATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGa                                                                                                                                   <  2:31569/141‑1 (MQ=255)
         gTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGa                                                                                                                                   <  1:108482/141‑1 (MQ=255)
         gTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGa                                                                                                                                   >  2:800968/1‑141 (MQ=255)
              ttttATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGt                                                                                                                              >  2:674963/1‑141 (MQ=255)
                 tATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTACTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTa                                                                                                                           <  2:773512/141‑1 (MQ=255)
                 caattttttaaacaacatccagaagcggcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTa                                                                                                                           <  1:409864‑M1/18‑1 (MQ=255)
                  atcaatcaGTTAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAg                                                                                                                          <  2:317772/141‑1 (MQ=255)
                  atcaatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAg                                                                                                                          <  2:17879/141‑1 (MQ=255)
                  atcaatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAg                                                                                                                          >  2:173836/1‑141 (MQ=255)
                   tcaatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAgg                                                                                                                         >  1:177564/1‑141 (MQ=255)
                   tcaatcaGTAAGTTTTACATTCGCATTATCATCTAAAAAGAACGATTTTTCATAAGCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTGCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAgg                                                                                                                         <  2:1004398/141‑1 (MQ=255)
                    caatcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGt                                                                                                                        >  2:42019/1‑141 (MQ=255)
                      atcaGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTGTTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGATaa                                                                                                                      >  2:180153/1‑140 (MQ=255)
                         aGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATCATCCTTTGGTTGGTGCCATGTTGTTTTCCACATTCTATATCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAAGTACaac                                                                                                                   >  2:225052/1‑140 (MQ=255)
                         aGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCAGTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAg                                                                                                                   >  1:464319/1‑141 (MQ=255)
                           tAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGcc                                                                                                                 >  1:607070/1‑141 (MQ=255)
                              gTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATa                                                                                                              <  2:1068816/141‑1 (MQ=255)
                                tttACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACACGCCATaaa                                                                                                            <  2:109622/141‑1 (MQ=255)
                                  tACTTTCGGATTATCAGCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAAcc                                                                                                          <  1:298957/141‑1 (MQ=255)
                                    cTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCtt                                                                                                        >  1:416028/1‑140 (MQ=255)
                                        cGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGcc                                                                                                    >  1:650073/1‑141 (MQ=255)
                                        cGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGcc                                                                                                    >  2:1080327/1‑141 (MQ=255)
                                          cATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGTTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCa                                                                                                  >  2:1093568/1‑141 (MQ=255)
                                            ttATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaat                                                                                                >  1:1157375/1‑141 (MQ=255)
                                            gcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaat                                                                                                >  1:172072‑M1/97‑141 (MQ=255)
                                            gcaaataaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaat                                                                                                >  1:720284‑M1/97‑141 (MQ=255)
                                             tATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaata                                                                                               <  1:585745/141‑1 (MQ=255)
                                              atcatcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaataa                                                                                              >  2:1102139/1‑141 (MQ=255)
                                              atcatcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaataa                                                                                              >  1:293568/1‑141 (MQ=255)
                                              atcatcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCaataa                                                                                              >  1:1103930/1‑141 (MQ=255)
                                                 atcTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAGGCCATAAACCTACGCCCAATAAttt                                                                                           >  1:962198/1‑141 (MQ=255)
                                                  aaaaatagtgtgattttacagaaaggtgatcgtatatattttgaatcgcaggcgattattaaactaatcacagcactacctaatcgaactAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTa                                                                                          >  2:409864‑M1/91‑141 (MQ=255)
                                                    tAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTCTTATTAGCAAACATTCGATAACCGCAATTACGGACTGGTTTAGGTACAAGCCATTAACCTACGGCCAATAATTTatt                                                                                        >  1:356991/1‑139 (MQ=255)
                                                        aaGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGa                                                                                    >  2:1112811/1‑141 (MQ=255)
                                                            aCGATTTTTCTTTTTTTTTTGGTTGGTGCCATGTTGTTTTCCACAATCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTAGATTAGGTACAAGCCATAAACTTACGCCCAATAATTTAGTTCTATTAg                                                                                >  2:364822/1‑141 (MQ=255)
                                                             cgttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                               <  2:942079/138‑1 (MQ=255)
                                                             cGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAgg                                                                               <  2:1153154/141‑1 (MQ=255)
                                                              gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAActtgctgcgtgttggt                                                                              >  2:1142226/1‑128 (MQ=255)
                                                              gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGt                                                                              <  1:674963/141‑1 (MQ=255)
                                                              gATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATCTAAAATATTAGCAAACATTCGATAACCGAAATTACGGACAGGTTTAGGTACAAGCCATAAACCTAAGCCCAATAATTTGGTTCGATTAgtt                                                                              >  1:102318/1‑139 (MQ=255)
                                                               ttttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTTGATAACCGAAATGACGTACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTa                                                                             <  2:52741/140‑1 (MQ=255)
                                                                tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            >  1:691279/1‑141 (MQ=255)
                                                                tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            <  2:660917/141‑1 (MQ=255)
                                                                tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            >  1:1186283/1‑141 (MQ=255)
                                                                tttttCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAg                                                                            <  1:98721/141‑1 (MQ=255)
                                                                       tAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGACCAATAATTTAGTTCGATTAGGTAGTGCtgtg                                                                     >  1:808931/1‑141 (MQ=255)
                                                                        taTCATTTGGTTGGTGGCATGTTGTTTGCCACATTCTATTTCTATTAATAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGa                                                                    <  1:119868/140‑1 (MQ=255)
                                                                             tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                               >  1:417873/1‑141 (MQ=255)
                                                                             tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                               >  2:1045026/1‑141 (MQ=255)
                                                                             tttGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGt                                                               >  1:216821/1‑141 (MQ=255)
                                                                                    ggtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAGTAATTTAGTTCGATTAGGTGGTGCTGTGATTAGTGtaataa                                                        >  2:1119338/1‑141 (MQ=255)
                                                                                     gtaccATGTTGTTTCCCACAGTCTATTTCTATAATTAGCAAACATTCGATAACCGAAATTACTGACCGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                       <  2:356991/138‑1 (MQ=255)
                                                                                     gtGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTaataat                                                       <  1:1067945/141‑1 (MQ=255)
                                                                                      tGCCGTGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATc                                                      >  2:80083/1‑141 (MQ=255)
                                                                                        ccATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGc                                                    <  1:17741/141‑1 (MQ=255)
                                                                                         cATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGcc                                                   >  2:198339/1‑141 (MQ=255)
                                                                                           tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                 <  1:1095178/141‑1 (MQ=255)
                                                                                           tgttgtTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTg                                                 <  1:603541/141‑1 (MQ=255)
                                                                                            tttgttTTCCACATTCTATTTCTATTCTTACAAAACATTCGATAACCGAAATTATGGACTGGTTTAGGTACAAGCCATAAAACTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGTTTATTTTAATAATCGCCTGc                                                <  1:288896/140‑1 (MQ=255)
                                                                                             ttgttCTCCACATTCGATTTCTGTTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCg                                               <  2:123221/141‑1 (MQ=255)
                                                                                                ttctCCACATTCGTTTTCTATAATCAGCAAACAGTCTATAACCGAAATTACGGCCTGGTTTAGGTACAAGCCATAAACCTACGCCTAATAATTTAGTTCCATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGAtt                                            <  2:43676/138‑1 (MQ=255)
                                                                                                  ttCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCa                                          <  2:1186283/141‑1 (MQ=255)
                                                                                                      acaTTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGTTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAat                                      >  2:372775/1‑141 (MQ=255)
                                                                                                         ttctatttctatTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatata                                   >  2:1122661/1‑141 (MQ=255)
                                                                                                          tctatctctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAatatat                                  <  2:871791/141‑1 (MQ=255)
                                                                                                             atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                               >  1:699525/1‑141 (MQ=255)
                                                                                                             atttctattATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                               >  1:833864/1‑141 (MQ=255)
                                                                                                             atttctattATTAGCAAAAATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACg                               <  2:245958/141‑1 (MQ=255)
                                                                                                                   attattAGCAAACATTCGATGACGGAAATTGCGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATGCGATGAcc                         >  2:966108/1‑141 (MQ=255)
                                                                                                                   attattAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCAcc                         >  1:504745/1‑141 (MQ=255)
                                                                                                                    ttattaGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACACGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTCGTTTAATAATCGCCTGTGATTCACAATAGTTACGATCGCCt                        >  2:1099920/1‑141 (MQ=255)
                                                                                                                         tgCAAACATTCGATAACCGAATTTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTTATTATTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                   <  2:962301/140‑1 (MQ=255)
                                                                                                                         aGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTg                   >  1:1191607/1‑141 (MQ=255)
                                                                                                                          tcAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGt                  <  2:1198991/140‑1 (MQ=255)
                                                                                                                          gccaaCATTCGATAACCGAAATGACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCAcagcactac                  <  2:927627/138‑9 (MQ=255)
                                                                                                                           cAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATAACCTGGCATTAAAATTAGATAAGactcaattcctcta                 >  1:1170392/1‑128 (MQ=255)
                                                                                                                           cAAACATTCGATAACCGAAAATACGGACTGGTTTAGGTACAAGCTATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCAGAGATTAGTTTAATAATCGCCGGCGATTCAAAATATATACGATCACCTTTCTGTa                 >  2:654469/1‑141 (MQ=255)
                                                                                                                            aaaCATTCGATAACCGAAATTACGGACTTGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                <  2:934052/141‑1 (MQ=255)
                                                                                                                            aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                <  1:261428/141‑1 (MQ=255)
                                                                                                                            aaaCATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTaa                <  2:685254/141‑1 (MQ=255)
                                                                                                                                  tCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCGTTCTGTAAAAtaaa          >  1:40776/1‑138 (MQ=255)
                                                                                                                                   cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca         >  1:132303/1‑141 (MQ=255)
                                                                                                                                   cGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATcaca         >  1:803211/1‑141 (MQ=255)
                                                                                                                                    gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac        >  2:1075524/1‑141 (MQ=255)
                                                                                                                                    gATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCacac        >  2:1075511/1‑141 (MQ=255)
                                                                                                                                        aCCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtt    <  1:800968/141‑1 (MQ=255)
                                                                                                                                          cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGGCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt  >  1:819011/1‑141 (MQ=255)
                                                                                                                                          cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt  <  1:641620/141‑1 (MQ=255)
                                                                                                                                          cGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTAtttt  >  1:1055641/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                          
AATTAGCAAGTATGTTTTATCAATCAGTAAGTTTTACTTTCGCATTATCATCTAAAAAGAACGATTTTTCATAATCATTTGGTTGGTGCCATGTTGTTTTCCACATTCTATTTCTATTATTAGCAAACATTCGATAACCGAAATTACGGACTGGTTTAGGTACAAGCCATAAACCTACGCCCAATAATTTAGTTCGATTAGGTAGTGCTGTGATTAGTTTAATAATCGCCTGCGATTCAAAATATATACGATCACCTTTCTGTAAAATCACACTATTTT  >  CP000730/2257092‑2257370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.