New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 267142045 (0.920)3 (0.060) 3/250 NT 6.5% coding (171/345 nt) USA300HOU_2526 possible thioredoxin
?CP000730 = 2671462 43 (0.920)coding (129/345 nt) USA300HOU_2526 possible thioredoxin

ATCATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2671276‑2671420
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gac‑ttGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT  <  CP000730/2671462‑2671324
                                                                                                                                                                                                                                                                                             
ATCATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTG                                                                                                                                                  <  1:327211/141‑1
  CATTCATTTGCTGAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACGGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC                                                                                                                                                >  1:403476/1‑141
  CATTAATTTGCTAAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC                                                                                                                                                >  1:403193/1‑141
   ATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACT                                                                                                                                              <  1:177677/141‑1
                                           ATAAAACGCCCTTGACGATGCATTTCTTTTCCTGTCATAACAATTAAATCCACAGTTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTGATGCAATCACATCCCAATCTGCCATTAGCTGTGATTAA                                                                                                      <  2:118839/141‑1
                                                   CCCTTGACGAAGCATTTCATTTCCATTCATAAAAATTAAATCCACAGGGACAGTGAAAATATTTAATTCTCCAGCAATAGTTTCCACCTGACTTCATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTC                                                                                              <  2:27293/141‑1
                                                                                                   TACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTG                                               >  2:528911/1‑141
                                                                                                                                            agtccTGAAGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGG      <  1:337664/136‑1
                                                                                                                                            GACTTGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGG     >  1:153276/1‑141
                                                                                                                                                TTGATGTAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGATGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT  <  2:264638/141‑1
                                                                                                                                                TTGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT  <  2:475811/141‑1
                                                                                                                                                                                                                                                                                             
ATCATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2671276‑2671420
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gac‑ttGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT  <  CP000730/2671462‑2671324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.