| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2671420 | 45 (0.920) | 3 (0.060) | 3/250 | NT | 6.5% | coding (171/345 nt) | USA300HOU_2526 | possible thioredoxin |
| ? | CP000730 | = 2671462 | 43 (0.920) | coding (129/345 nt) | USA300HOU_2526 | possible thioredoxin | |||||
ATCATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2671276‑2671420‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gac‑ttGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT < CP000730/2671462‑2671324 ATCATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTG < 1:327211/141‑1 CATTCATTTGCTGAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACGGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC > 1:403476/1‑141 CATTAATTTGCTAAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC > 1:403193/1‑141 ATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑T < 1:177677/141‑1 ATAAAACGCCCTTGACGATGCATTTCTTTTCCTGTCATAACAATTAAATCCACAGTTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTGATGCAATCACATCCCAATCTGCCATTAGCTGTGATTAA < 2:118839/141‑1 CCCTTGACGAAGCATTTCATTTCCATTCATAAAAATTAAATCCACAGGGACAGTGAAAATATTTAATTCTCCAGCAATAGTTTCCACCTGAC‑TTCATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTC < 2:27293/141‑1 TACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTG > 2:528911/1‑141 agtccTGAAGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGG < 1:337664/136‑1 GAC‑TTGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGG > 1:153276/1‑141 TTGATGTAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGATGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT < 2:264638/141‑1 TTGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT < 2:475811/141‑1 ATCATTCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2671276‑2671420‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gac‑ttGATGCAATCATATCCCAATGTGCCATTAGCTGTGATTAATCAAAGTCAGGTGGAAGCTATTGCTGGAGAATTAAATATTTTCACTGTACCTGTGGATTTAATTTTTATGAATGGAAAAGAAATGCATCGTCAAGGGCGT < CP000730/2671462‑2671324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |