New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2671420	45 (0.920)	3 (0.060)	3/250	NT	6.5%	coding (171/345 nt)	USA300HOU_2526	possible thioredoxin
	?	CP000730	= 2671462	43 (0.920)					coding (129/345 nt)	USA300HOU_2526	possible thioredoxin

AAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCTTAACCATTTCGAACAC  >  CP000730/2671322‑2671599                                                                                                                                             |                                                                                                                                          aaaCGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACCTTGGGATATGATTGCATc                                                                                                                                           >  1:539431/1‑141 (MQ=255)   aCGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCATCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTACATCaa                                                                                                                                         <  2:264638‑M2/141‑3 (MQ=255)   aCGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCaa                                                                                                                                         <  2:475811‑M2/141‑3 (MQ=255)      cccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCaagtc                                                                                                                                      >  1:153276‑M2/1‑136 (MQ=255)       ccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCTTCaggact                                                                                                                                     <  1:337664‑M2/141‑7 (MQ=255)       ccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCt                                                                                                                                     <  2:248055/141‑1 (MQ=255)       ccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCt                                                                                                                                     >  2:263639/1‑141 (MQ=255)         ttGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGAATATGATTGCATCAAGTCTTc                                                                                                                                   >  2:411881/1‑141 (MQ=255)           gACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCaa                                                                                                                                 >  2:84568/1‑141 (MQ=255)              gATTCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAAttt                                                                                                                              <  2:412857/141‑1 (MQ=255)                tGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTtgt                                                                                                                            >  1:225793/1‑141 (MQ=255)                          ttCCATTCATAAATATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTTATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACgg                                                                                                                  <  2:251715/141‑1 (MQ=255)                          ttCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGCCTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGCCTTCAATCTGTAGTAAAACga                                                                                                                  >  1:76157/1‑140 (MQ=255)                          ttCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACgg                                                                                                                  <  2:178335/141‑1 (MQ=255)                          ttCCATTCATAAAAAATAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACgg                                                                                                                  <  2:247769/141‑1 (MQ=255)                            ccATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCa                                                                                                                <  1:196446/141‑1 (MQ=255)                            ccATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCa                                                                                                                >  1:309834/1‑141 (MQ=255)                             cATTCACAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATTGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCAt                                                                                                               <  2:36508/141‑1 (MQ=255)                                  aTAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGacac                                                                                                          <  2:250293/141‑1 (MQ=255)                                      aaatcaaatcCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGCATATGCTTGCATCCAGCCTTCAGTTTGTGGTAAAACGGCATGACACACGc                                                                                                      >  2:100989/1‑141 (MQ=255)                                      aaaTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGc                                                                                                      <  1:84568/141‑1 (MQ=255)                                       aaTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCt                                                                                                     <  1:324494/141‑1 (MQ=255)                                       aaTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCt                                                                                                     <  1:406234/141‑1 (MQ=255)                                       aaTTAAATCCACAGGTACAGCGCCAATATTTCATTCTACCGCAATCCCTCCCACCTGACTGTTAGTAATCACAGCGTATTGCACATTCGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCt                                                                                                     <  2:49275/141‑1 (MQ=255)                                        aTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCAAATAGGTATGTTATTGCATCAAGTCTTCAATTTGGGGTAAAACGGCATGACACACGCTa                                                                                                    >  1:159003/1‑141 (MQ=255)                                                cacaGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCaaagtcaggtggaagctattgctggagaattaaatattttcactgta                                                                                            >  2:528911‑M2/1‑94 (MQ=255)                                                     gTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCa                                                                                       >  1:546311/1‑141 (MQ=255)                                                        cAGTGAAAAGATTTAATTCTCCAGCACGATCTTCCACCTGACTTTGATTAAACACAGCTCATGGCACATTGGTATAAGATAGCATCTACCCTTCAATATGGGGTAAAACAACAGGACACAAGCAACACTGATGCCGCAGGa                                                                                    >  2:10162/1‑141 (MQ=255)                                                              aaaTATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACAGTGATCGCGCATGACATGTa                                                                              >  1:131138/1‑141 (MQ=255)                                                              aaaTATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATAAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTTTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATgga                                                                              >  1:430701/1‑139 (MQ=255)                                                                      aaTTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATGGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATAACACACCCTACACAGATCGCGAATGCAGCGTACAACTGcc                                                                      >  1:530422/1‑140 (MQ=255)                                                                         tctcCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAAc                                                                   <  1:365660/141‑1 (MQ=255)                                                                          ctcCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACg                                                                  <  1:521096/141‑1 (MQ=255)                                                                                  aTAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATtga                                                          <  1:47686/141‑1 (MQ=255)                                                                                       ttCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAAt                                                     <  2:522303/141‑1 (MQ=255)                                                                                             gaagacttGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAACTTc                                               >  2:367334/7‑141 (MQ=255)                                                                                               gACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATGaagtcaggtggaaactattgctggagaattaaatattttcactgtccctgtggatttaatttttatgaatggaaatgaaatgcttcgtcaaggg                                             <  2:27293‑M2/141‑95 (MQ=255)                                                                                                       ttAATCACAGCTAATGGCAGATTGGGATGTGATTGCATCaagtcaggtggaagctattgctggagaattaaatattttcactgtaactgtggatttaattgttatgacaggaaaagaaatgcatcgtcaagggcgttttat                                     <  2:118839‑M2/141‑103 (MQ=255)                                                                                                       ttAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCt                                     >  2:218523/1‑141 (MQ=255)                                                                                                       ttAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACGGCTAACGGATATTGATGAATAAATTCACGGGATGCt                                     >  1:157021/1‑141 (MQ=255)                                                                                                       ttAATCACAGCGAATGGCACATTGGGATATGACTGCATCAAGTCTGCAATTCTTGGTAAAACGGCATGACACACGCTACACTGATCGCGCAGAACATGCCCGACTGCTAACGAAGATTGATGAATAAATTCACGGAAtcgt                                     >  2:195680/1‑138 (MQ=255)                                                                                                          aTCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCg                                  <  2:296924/141‑1 (MQ=255)                                                                                                           tCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGa                                 >  1:470511/1‑141 (MQ=255)                                                                                                           tCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGa                                 >  1:359143/1‑141 (MQ=255)                                                                                                           tCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATCCACGGAATGCTTCGa                                 >  1:208014/1‑141 (MQ=255)                                                                                                               aGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTACCGGATATTGATGAATAAATCCACGGAATGCTTCGacacg                             >  1:99070/1‑140 (MQ=255)                                                                                                                gCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGGTATTGATGAATAAATTCACGGAATGCTTCGACACTa                            >  1:457226/1‑141 (MQ=255)                                                                                                                gCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAAATCACGGGATGCTTCGACCCTa                            >  1:117817/1‑141 (MQ=255)                                                                                                                    aTGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTa                        >  2:25547/1‑141 (MQ=255)                                                                                                                        cacaTTGGGATTAGAGTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATCCACGGAATGCTTCGACACTATTTAATTg                    >  2:125545/1‑141 (MQ=255)                                                                                                                          caTTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCt                  <  1:263639/141‑1 (MQ=255)                                                                                                                               ggATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCTTAAcc             <  2:334940/141‑1 (MQ=255)                                                                                                                                   aggATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCTTAACCAttt         <  1:264638/139‑1 (MQ=255)                                                                                                                                    tGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCTTAACCATTTc        <  1:392967/141‑1 (MQ=255)                                                                                                                                       ttGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCTTAACCATTTCGaa     >  1:495590/1‑141 (MQ=255)                                                                                                                                         gCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCAGGACATGTACAACTGCTAACGGATATTTATGAATAAATCCACGGAATGCTTCGACACCTTTTAATCGCATAACCaacacgaacg   >  2:116520/1‑132 (MQ=255)                                                                                                                                          cATCAAGTATTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATAGCGCATGACATGTACAACTGCTAACGGAAATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCGTAACCATTTCGAacac  >  2:421674/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                          AAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGAATGCTTCGACACTATTTAATTGCTTAACCATTTCGAACAC  >  CP000730/2671322‑2671599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.