New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2671420	45 (0.920)	3 (0.060)	3/250	NT	6.5%	coding (171/345 nt)	USA300HOU_2526	possible thioredoxin
	?	CP000730	= 2671462	43 (0.920)					coding (129/345 nt)	USA300HOU_2526	possible thioredoxin

TCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGA  >  CP000730/2671281‑2671559                                                                                                                                             |                                                                                                                                            tcattTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑ttt                                                                                                                                            <  2:568637/141‑1 (MQ=255) tcagtTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑ttt                                                                                                                                            <  1:410537/141‑1 (MQ=255)    tttGCTTAAGATGATGTTCAAATCGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGAt                                                                                                                                         <  2:532340/141‑1 (MQ=255)    tttGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGAt                                                                                                                                         <  1:351293/141‑1 (MQ=255)    tttGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTCTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGAt                                                                                                                                         <  1:384727/141‑1 (MQ=255)    tttGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCATTGACGATGCATTTATTTACCATACATAAAAATTAAATCAACAGGTACAGTGAAAATATGTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGAt                                                                                                                                         >  2:392967/1‑141 (MQ=255)        cTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAAt                                                                                                                                     <  2:504359/141‑1 (MQ=255)         ttAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATc                                                                                                                                    <  1:121092/141‑1 (MQ=255)                     tCACAACGTTGCATCTCGATAAAACGACCTTGACGATGCATTCCATTTCCATTCATAAAAACTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGc                                                                                                                        <  2:82175/141‑1 (MQ=255)                     tCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTAAA‑TTTGATTAATCACAGCTAATGGc                                                                                                                        >  1:3231/1‑141 (MQ=255)                      cAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGca                                                                                                                       >  2:365660/1‑141 (MQ=255)                         aaCGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACAt                                                                                                                    <  2:228775/141‑1 (MQ=255)                         aaCGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACAt                                                                                                                    >  1:124061/1‑141 (MQ=255)                            gTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGACCATTgg                                                                                                                 >  1:334940/1‑141 (MQ=255)                               gCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGat                                                                                                              >  1:522303/1‑141 (MQ=255)                                cATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGatt                                                                                                             >  2:66151/1‑140 (MQ=255)                                cATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGata                                                                                                             <  1:541004/141‑1 (MQ=255)                                 atatCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGatat                                                                                                            <  2:10967/141‑1 (MQ=255)                                    tCGATAAAACGCCCTTGACGATGCTTTTTCTTTCCATTCATAAAAATTAAATCCACTGTTACATTGAAAATATTTAATTCTCCAGCAATAGCTACCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGAt                                                                                                         <  2:372166/141‑1 (MQ=255)                                      gATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTg                                                                                                       <  2:409053/141‑1 (MQ=255)                                       acaaatCGCCCTGGCAGATGTATTTCATTTCCATTCATAGAAAGTAAATCCATAGGTACAGGGAAAATATGTAATTCTCCAGCAATAGCTTCCACCTGAC‑GTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGc                                                                                                      <  2:534005/139‑1 (MQ=255)                                       aTAAAACGCCCTTGACGATGCATTTCTTTTCCTGTCATAACAATTAAATCCACAGTTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTgatgcaatcacatcccaatctgccattagctgtgattaa                                                                                                      <  2:118839‑M1/141‑40 (MQ=255)                                          aaaCGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACCTTGGGATATGATTGCATc                                                                                                   >  1:539431/1‑141 (MQ=255)                                            aCGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCATCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTACATCaa                                                                                                 <  2:264638‑M2/141‑3 (MQ=255)                                            aCGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCaa                                                                                                 <  2:475811‑M2/141‑3 (MQ=255)                                               cccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCaagtc                                                                                              >  1:153276‑M2/1‑136 (MQ=255)                                               cccTTGACGAAGCATTTCATTTCCATTCATAAAAATTAAATCCACAGGGACAGTGAAAATATTTAATTCTCCAGCAATAGTTTCCACCTGAC‑TTcatgcaatcatatcccaatgtgccattagctgtgattaatcaaagtc                                                                                              <  2:27293‑M1/141‑48 (MQ=255)                                                ccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCTTCaggact                                                                                             <  1:337664‑M2/141‑7 (MQ=255)                                                ccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCt                                                                                             >  2:263639/1‑141 (MQ=255)                                                ccTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCt                                                                                             <  2:248055/141‑1 (MQ=255)                                                  ttGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGAATATGATTGCATCAAGTCTTc                                                                                           >  2:411881/1‑141 (MQ=255)                                                    gACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCaa                                                                                         >  2:84568/1‑141 (MQ=255)                                                       gATTCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAAttt                                                                                      <  2:412857/141‑1 (MQ=255)                                                         tGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTtgt                                                                                    >  1:225793/1‑141 (MQ=255)                                                                   ttCCATTCATAAATATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTTATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACgg                                                                          <  2:251715/141‑1 (MQ=255)                                                                   ttCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGCC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGCCTTCAATCTGTAGTAAAACga                                                                          >  1:76157/1‑140 (MQ=255)                                                                   ttCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACgg                                                                          <  2:178335/141‑1 (MQ=255)                                                                   ttCCATTCATAAAAAATAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACgg                                                                          <  2:247769/141‑1 (MQ=255)                                                                     ccATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCa                                                                        >  1:309834/1‑141 (MQ=255)                                                                     ccATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCa                                                                        <  1:196446/141‑1 (MQ=255)                                                                      cATTCACAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATTGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCAt                                                                       <  2:36508/141‑1 (MQ=255)                                                                           aTAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGacac                                                                  <  2:250293/141‑1 (MQ=255)                                                                               aaatcaaatcCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGCATATGCTTGCATCCAGCCTTCAGTTTGTGGTAAAACGGCATGACACACGc                                                              >  2:100989/1‑141 (MQ=255)                                                                               aaaTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGc                                                              <  1:84568/141‑1 (MQ=255)                                                                                aaTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCt                                                             <  1:406234/141‑1 (MQ=255)                                                                                aaTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCt                                                             <  1:324494/141‑1 (MQ=255)                                                                                aaTTAAATCCACAGGTACAGCGCCAATATTTCATTCTACCGCAATCCCTCCCACCTGAC‑TGTTAGTAATCACAGCGTATTGCACATTCGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCt                                                             <  2:49275/141‑1 (MQ=255)                                                                                 aTTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCAAATAGGTATGTTATTGCATCAAGTCTTCAATTTGGGGTAAAACGGCATGACACACGCTa                                                            >  1:159003/1‑141 (MQ=255)                                                                                         cacaGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCaaagtcaggtggaagctattgctggagaattaaatattttcactgta                                                    >  2:528911‑M2/1‑94 (MQ=255)                                                                                              gTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCa                                               >  1:546311/1‑141 (MQ=255)                                                                                               tACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGACTTTgatgcaatcatatcccaatgtgccattagctgtgattaatcaaagtcaggtggaagctattgctggagaattaaatattttcactgtacctgtg                                               >  2:528911‑M1/1‑47 (MQ=255)                                                                                                 cAGTGAAAAGATTTAATTCTCCAGCACGATCTTCCACCTGAC‑TTTGATTAAACACAGCTCATGGCACATTGGTATAAGATAGCATCTACCCTTCAATATGGGGTAAAACAACAGGACACAAGCAACACTGATGCCGCAGGa                                            >  2:10162/1‑141 (MQ=255)                                                                                                       aaaTATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACAGTGATCGCGCATGACATGTa                                      >  1:131138/1‑141 (MQ=255)                                                                                                       aaaTATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATAAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTTTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATgga                                      >  1:430701/1‑139 (MQ=255)                                                                                                               aaTTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATGGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATAACACACCCTACACAGATCGCGAATGCAGCGTACAACTGcc                              >  1:530422/1‑140 (MQ=255)                                                                                                                  tctcCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAAc                           <  1:365660/141‑1 (MQ=255)                                                                                                                   ctcCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACg                          <  1:521096/141‑1 (MQ=255)                                                                                                                           aTAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATtga                  <  1:47686/141‑1 (MQ=255)                                                                                                                                ttCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAAt             <  2:522303/141‑1 (MQ=255)                                                                                                                                       gaagacttGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAACTTc       >  2:367334/7‑141 (MQ=255)                                                                                                                                        gAC‑TTgatgcaatcatatcccaatgtgccattagctgtgattaatcaaagtcaggtggaagctattgctggagaattaaatattttcactgtacctgtggatttaatttttatgaatggaaaagaaatgcatcgtcaaggg     >  1:153276‑M1/1‑5 (MQ=255)                                                                                                                                        gAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATGaagtcaggtggaaactattgctggagaattaaatattttcactgtccctgtggatttaatttttatgaatggaaatgaaatgcttcgtcaaggg     <  2:27293‑M2/141‑95 (MQ=255)                                                                                                                                        agtcctgaagcaatcatatcccaatgtgccattagctgtgattaatcaaagtcaggtggaagctattgctggagaattaaatattttcactgtacctgtggatttaatttttatgaatggaaaagaaatgcatcgtcaagg      <  1:337664‑M1/136‑136 (MQ=255)                                                                                                                                            ttgatgtaatcatatcccaatgtgccattagctgtgattaatcaaagtcaggtggaagctattgatggagaattaaatattttcactgtacctgtggatttaatttttatgaatggaaaagaaatgcatcgtcaagggcgt  <  2:264638‑M1/141‑140 (MQ=255)                                                                                                                                            ttgatgcaatcatatcccaatgtgccattagctgtgattaatcaaagtcaggtggaagctattgctggagaattaaatattttcactgtacctgtggatttaatttttatgaatggaaaagaaatgcatcgtcaagggcgt  <  2:475811‑M1/141‑140 (MQ=255)                                                                                                                                             |                                                                                                                                            TCATTTGCTTAAGATGATGTTCAAAACGTTGCATATCGATAAAACGCCCTTGACGATGCATTTCTTTTCCATTCATAAAAATTAAATCCACAGGTACAGTGAAAATATTTAATTCTCCAGCAATAGCTTCCACCTGAC‑TTTGATTAATCACAGCTAATGGCACATTGGGATATGATTGCATCAAGTCTTCAATTTGTGGTAAAACGGCATGACACACGCTACACTGATCGCGCATGACATGTACAACTGCTAACGGATATTGATGAATAAATTCACGGA  >  CP000730/2671281‑2671559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.