New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	748995 =	82 (1.250)	3 (0.050)	3/256	NT	3.6%	coding (64/96 nt)	USA300HOU_0695	hypothetical protein
	?	CP000730	749026 =	80 (1.240)					coding (95/96 nt)	USA300HOU_0695	hypothetical protein

GCAACAAAGAGTTTATAATTCTTTATTTGTAATAACGCTGCAAACATATCCATAACCCCGCTTCTTAGAGCCCCTTTTAATTTATTAATTAGGGGCTCTTATGCAGTTGG‑TGCGTTAGCATCCAACTGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/749125‑748995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAAGAGCCCCTAATTAATAAATTAAAAGGGGCTCTAAGAAGCGGGGTTATGGATATGTTTGCAGCGTTATTACAAATAAAGAATTATAAACTCTTTGTTGCTAATATGTTTCTACTAGGTATGGGTATTGCGGTTACGGT  >  CP000730/749026‑749164                                                                                                                                                                                                                                                                                 gaAACAAAGAGTTTATAATTCTTTATTTGTAATAACGCTGCAAACATATCCATAACCCCGCTTCTTAGAGCCCCTTTTAATTTATGAATTAGGGGCTCTTATACAGTTGGATGCTAACGCA‑CCAACTGCATAAGAGCCCCT                                                                                                                                   <  2:719997/139‑1                                   ACGCTGCAAACATATCTATAACCCCGCTTCTTAGAGCCCCTTTTAATTTATTAATTAGGGGCTCTTAGACAGTTGGATGATAACGCA‑CCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGGCTCTAAGAAGCGGG                                                                                                 <  2:113855/141‑1                                                                                                                     TAGCATCCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGGCTCTAAGAAGCGGGGTTATGGATATGTTTGCAGCGTTATTACAAATAAAGAATTATAAACTCTTTGTTGCTAATATGTTTCTACTAGGTATGGGT                >  1:212964/1‑141                                                                                                                                   ATAAGAGCCCCTAATTAATAAATTAAAAGGGGCTCTAAGAAGCGGGGTTATGGATATGTTTGCAGCGTTATTACAAATAAAGAATTATAAACTCTTTGTTGCTAATATGTTTCTACTAGGTATGGGTATTGCGGTTACGGT  >  2:563311/1‑141                                                                                                                                                                                                                                                                                 GCAACAAAGAGTTTATAATTCTTTATTTGTAATAACGCTGCAAACATATCCATAACCCCGCTTCTTAGAGCCCCTTTTAATTTATTAATTAGGGGCTCTTATGCAGTTGG‑TGCGTTAGCATCCAACTGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/749125‑748995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAAGAGCCCCTAATTAATAAATTAAAAGGGGCTCTAAGAAGCGGGGTTATGGATATGTTTGCAGCGTTATTACAAATAAAGAATTATAAACTCTTTGTTGCTAATATGTTTCTACTAGGTATGGGTATTGCGGTTACGGT  >  CP000730/749026‑749164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.