| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1702267 | 59 (0.790) | 4 (0.060) | 4/238 | NT | 6.4% | intergenic (‑2/+38) | comEA/USA300HOU_1592 | possible competence protein comEA/hypothetical protein |
| ? | CP000730 | = 1702290 | 64 (0.940) | intergenic (‑25/+15) | comEA/USA300HOU_1592 | possible competence protein comEA/hypothetical protein | |||||
CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1702121‑1702267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaccactcGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG < CP000730/1702290‑1702153 CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA > 1:704737/1‑141CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA < 2:191872/141‑1CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATATTTATATCGTAATAAAAATTGATACAATAAAA > 2:137854/1‑141 AAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAATCAATTAATACCATATTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAC < 2:316242/141‑1 AAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAC < 1:358520/141‑1 ATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAC < 1:112933/141‑1 AAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GTGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGG < 1:53944/141‑1 AAAAATTGATACAATAAAACCACTC‑CTCA‑AC‑TTTATACACGTCTGAGCGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGG < 2:53944/141‑1 AAAATTGATACAATAAAACCACTCGCTCAGAAGGTTATA‑AAGA‑GGAG‑GTGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGT < 1:667709/141‑1 AAAATTGATACAATAAAACCACTC‑CTCA‑AC‑TTTATACACGTCTGAGCGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGT < 2:667709/141‑1 gtatAACCCCTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTCGTTTTAATTATGGTATTAATTGGTTT < 1:281522/137‑1 CCACTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTTTGGTATTAATTGGTTTTATATT > 1:368000/1‑141 CTCGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG > 2:205082/1‑141 CTCGCTCAGACGTGTATA‑AAGG‑TGAG‑GAGTTGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG < 1:242189/141‑1 CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1702121‑1702267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaccactcGCTCAGACGTGTATA‑AAGT‑TGAG‑GAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG < CP000730/1702290‑1702153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |