New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 170226759 (0.790)4 (0.060) 4/238 NT 6.4% intergenic (‑2/+38) comEA/USA300HOU_1592 possible competence protein comEA/hypothetical protein
?CP000730 = 1702290 64 (0.940)intergenic (‑25/+15) comEA/USA300HOU_1592 possible competence protein comEA/hypothetical protein

CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1702121‑1702267
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaccactcGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  <  CP000730/1702290‑1702153
                                                                                                                                                                                                                                                                                                
CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA                                                                                                                                                     >  1:704737/1‑141
CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAA                                                                                                                                                     <  2:191872/141‑1
CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATATTTATATCGTAATAAAAATTGATACAATAAAA                                                                                                                                                     >  2:137854/1‑141
 AAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAATCAATTAATACCATATTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAC                                                                                                                                                    <  2:316242/141‑1
 AAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAAC                                                                                                                                                    <  1:358520/141‑1
    ATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAC                                                                                                                                                 <  1:112933/141‑1
                                                                                                                          AAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGTGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGG                        <  1:53944/141‑1
                                                                                                                          AAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGG                        <  2:53944/141‑1
                                                                                                                           AAAATTGATACAATAAAACCACTCGCTCAGAAGGTTATAAAGAGGAGGTGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGT                       <  1:667709/141‑1
                                                                                                                           AAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGT                       <  2:667709/141‑1
                                                                                                                                       gtatAACCCCTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTCGTTTTAATTATGGTATTAATTGGTTT           <  1:281522/137‑1
                                                                                                                                             CCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTTTGGTATTAATTGGTTTTATATT     >  1:368000/1‑141
                                                                                                                                                CTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  >  2:205082/1‑141
                                                                                                                                                CTCGCTCAGACGTGTATAAAGGTGAGGAGTTGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  <  1:242189/141‑1
                                                                                                                                                                                                                                                                                                
CAAAATTTCTTGAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1702121‑1702267
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaccactcGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTG  <  CP000730/1702290‑1702153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.