New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1702267	59 (0.790)	4 (0.060)	4/238	NT	6.4%	intergenic (‑2/+38)	comEA/USA300HOU_1592	possible competence protein comEA/hypothetical protein
	?	CP000730	= 1702290	64 (0.940)					intergenic (‑25/+15)	comEA/USA300HOU_1592	possible competence protein comEA/hypothetical protein

GAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCT  >  CP000730/1702132‑1702404                                                                                                                                        |                                                                                                                                             gAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCa‑a                                                                                                                                       >  2:508827/1‑141 (MQ=255) gAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCa‑a                                                                                                                                       >  2:781113/1‑141 (MQ=255)  aaGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑Ac                                                                                                                                      <  1:10065/141‑1 (MQ=255)     tataAGCATCTTGTCTCCCGCATATAAAACCAACTAATACCATAATTAAAACAACAGCACTTAGGATATATAACTTCCCTTGAGTGAAAAAATCTTTATAGCGTAATAAAAATTGTTCCAATAAAACCACTC‑CTCC‑ACtt‑t                                                                                                                                  >  2:337272/1‑141 (MQ=255)       taATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑tat                                                                                                                                >  1:351858/1‑141 (MQ=255)        aaTCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑tata                                                                                                                               >  2:692389/1‑141 (MQ=255)            atcTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACg                                                                                                                           <  1:570619/141‑1 (MQ=255)            atcTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACg                                                                                                                           <  1:570787/141‑1 (MQ=255)                      cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCgag                                                                                                                 >  2:205082‑M2/1‑138 (MQ=255)                      cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACAACTC‑CTCA‑CCTT‑TATACACGTCTGAGCgag                                                                                                                 <  1:242189‑M2/141‑4 (MQ=255)                         aaTATAAAACCAATTAATACCAAAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCgagtgg                                                                                                              >  1:368000‑M2/1‑135 (MQ=255)                               aaaCCAATTAATACCATAATTAAAACGACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCgaggggttatac                                                                                                        <  1:281522‑M2/141‑13 (MQ=255)                               aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACAGGTCTGAGGGAGTGGATTTAc                                                                                                        >  2:167060/1‑141 (MQ=255)                               aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTAc                                                                                                        >  1:167193/1‑141 (MQ=255)                                          tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCTATC‑CTCA‑GCTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                             <  1:593920/141‑1 (MQ=255)                                          tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                             >  1:212928/1‑141 (MQ=255)                                           aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAA‑GT‑TGAGagtggttttattgtatcaatttt                                                                                              <  2:667709‑M2/141‑24 (MQ=255)                                           aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACAC‑CTCC‑TCTT‑TATAACCTTCTGAGCgagtggttttattgtatcaatttt                                                                                            <  1:667709‑M2/141‑25 (MQ=255)                                            ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAA‑GT‑TGAGagtggttttattgtatcaattttt                                                                                             <  2:53944‑M2/141‑25 (MQ=255)                                            ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTTGTTTTACTTTTATTTTTTCg                                                                                           <  1:526351/141‑1 (MQ=255)                                            ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTGTTACTTTTATTTTTTCg                                                                                           >  2:255877/1‑141 (MQ=255)                                            ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACAC‑CTCA‑ACTT‑TATACACGTCTGAGCgagtggttttattgtatcaattttt                                                                                           <  1:53944‑M2/141‑26 (MQ=255)                                                    aaaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaa                                                                                   >  1:784861/1‑141 (MQ=255)                                                       acaacaGCACTTAGAATATATAAATCCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAacac                                                                                >  2:835572/1‑141 (MQ=255)                                                           caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAta                                                                            >  2:369674/1‑140 (MQ=255)                                                           caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                            <  1:692389/141‑1 (MQ=255)                                                           caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                            >  2:37517/1‑141 (MQ=255)                                                               ccTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                                        <  1:152052/140‑1 (MQ=255)                                                                  tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTGCATTGTAAAACAATCTTTCTGc                                                                     >  2:243011/1‑141 (MQ=255)                                                                  tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                     >  2:862325/1‑141 (MQ=255)                                                                  tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                     <  2:351858/141‑1 (MQ=255)                                                                  tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                     <  1:469930/141‑1 (MQ=255)                                                                    gAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCAt                                                                   <  1:359464/141‑1 (MQ=255)                                                                        atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                               <  1:781113/141‑1 (MQ=255)                                                                         tataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCa                                                              >  2:794556/1‑141 (MQ=255)                                                                             aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑CATT‑TATACACGTCTGAGCGAGGGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTAt                                                          <  1:413158/141‑1 (MQ=255)                                                                                   aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt                                                    >  1:868382/1‑141 (MQ=255)                                                                                   aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAACCTTTCTGCACCTTCAtaaactaaac                                                    >  2:212410/1‑132 (MQ=255)                                                                                    ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                   <  1:83703/141‑1 (MQ=255)                                                                                    ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                   <  1:94863/141‑1 (MQ=255)                                                                                     tgtgTTAAAATATTTTTATAGCTTAAAAAAAATTGATACAGTAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTATTTTTATTTATAAAAAAAAAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                  <  2:476900/138‑1 (MQ=255)                                                                                     tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                  <  2:476796/141‑1 (MQ=255)                                                                                      gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCCATGAAAAACAATCTTTCTGCATCTTCTTTATGTTCATCtt                                                 >  1:103691/1‑140 (MQ=255)                                                                                      gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCta                                                 <  1:662500/141‑1 (MQ=255)                                                                                        gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                               >  1:588803/1‑141 (MQ=255)                                                                                         ttAAAAAATCTTCATAGCGGAAGAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                              <  1:216144/141‑1 (MQ=255)                                                                                            aaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaa                                           >  1:234100/1‑141 (MQ=255)                                                                                                          cGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtt                             <  1:324955/141‑1 (MQ=255)                                                                                                           ttaacaaAAATTGATACAATAAAACCGCGC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                            <  1:549901/140‑1 (MQ=255)                                                                                                           gTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                            <  1:605327/141‑1 (MQ=255)                                                                                                            taataaAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                           >  1:626666/1‑141 (MQ=255)                                                                                                            taataaAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                           >  1:733410/1‑141 (MQ=255)                                                                                                                aaaaaTTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggtgtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatgg                          <  1:53944‑M1/141‑117 (MQ=255)                                                                                                                aaaaaTTGATACAATAAAACCACTCctcaactttatacacgtctgagcgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatgg                          <  2:53944‑M1/141‑117 (MQ=255)                                                                                                                 aaaaTTGATACAATAAAACCACTCgctcagaaggttataaagaggaggtgtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggt                         <  1:667709‑M1/141‑118 (MQ=255)                                                                                                                 aaaaTTGATACAATAAAACCACTCctcaactttatacacgtctgagcgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggt                         <  2:667709‑M1/141‑118 (MQ=255)                                                                                                                  aaaTTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCATTAAATGTTTAAACAtt                     >  2:509458/1‑140 (MQ=255)                                                                                                                  aaaTTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg                     >  2:705952/1‑141 (MQ=255)                                                                                                                    atggagaCAATAAAACCCCAC‑CTCC‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAACCAGTAAATGTTTCAACATGtt                   <  1:555075/135‑1 (MQ=255)                                                                                                                     ttGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGttt                  >  1:693903/1‑141 (MQ=255)                                                                                                                     ttGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAGTATGTTCATCTATATTAAAATCAGTAAATGTTTCACCATGttt                  >  1:80476/1‑141 (MQ=255)                                                                                                                         tACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa              <  1:137854/141‑1 (MQ=255)                                                                                                                         tACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTGCAACATGTTTaaaa              <  1:450418/141‑1 (MQ=255)                                                                                                                         aaCAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa              <  1:121003/140‑1 (MQ=255)                                                                                                                             gtataaccccTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgtcgttttaattatggtattaattggttt             <  1:281522‑M1/137‑130 (MQ=255)                                                                                                                             aTAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCaa          >  2:22664/1‑141 (MQ=255)                                                                                                                              tagaaCCCCGC‑CTCA‑CCTT‑CATACACGTCTGAGCGAGTGGTTTTACTTTTCTTTTTTCGCAATGAAAAACAATCTTACTGCATCTTCATGATGTGCATCTATATTAAAATCTGCAAATGTTTCAACATTTTTAAAACCAAc         <  2:147378/138‑1 (MQ=255)                                                                                                                              tAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:191671/141‑1 (MQ=255)                                                                                                                              tAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:825840/141‑1 (MQ=255)                                                                                                                              tAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:420137/141‑1 (MQ=255)                                                                                                                              tAAAACCACCC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:289888/141‑1 (MQ=255)                                                                                                                              atacaCCACTC‑TTAA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTGTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTACAATCCGTATACGTTTCAACATGTTTAAAACCAAc         <  2:184221/137‑1 (MQ=255)                                                                                                                                aaaCCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACtt       <  1:746906/141‑1 (MQ=255)                                                                                                                                  aCCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGa     >  2:653205/1‑141 (MQ=255)                                                                                                                                   ccACTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattttggtattaattggttttatatt       >  1:368000‑M1/1‑6 (MQ=255)                                                                                                                                    cACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGc   <  1:320662/141‑1 (MQ=255)                                                                                                                                     aCTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt  >  1:141600/1‑141 (MQ=255)                                                                                                                                     aCTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt  >  2:33677/1‑141 (MQ=255)                                                                                                                                      cTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggtattaattggttttatattctg    >  2:205082‑M1/1‑3 (MQ=255)                                                                                                                                      cTCgctcagacgtgtataaaggtgaggagttgttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggtattaattggttttatattctg    <  1:242189‑M1/141‑139 (MQ=255)                                                                                                                                        |                                                                                                                                             GAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCT  >  CP000730/1702132‑1702404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.