New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 170226759 (0.790)4 (0.060) 4/238 NT 6.4% intergenic (‑2/+38) comEA/USA300HOU_1592 possible competence protein comEA/hypothetical protein
?CP000730 = 1702290 64 (0.940)intergenic (‑25/+15) comEA/USA300HOU_1592 possible competence protein comEA/hypothetical protein

GAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCT  >  CP000730/1702132‑1702404
                                                                                                                                       |                                                                                                                                            
gAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCaa                                                                                                                                       >  2:508827/1‑141 (MQ=255)
gAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCaa                                                                                                                                       >  2:781113/1‑141 (MQ=255)
 aaGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAAc                                                                                                                                      <  1:10065/141‑1 (MQ=255)
    tataAGCATCTTGTCTCCCGCATATAAAACCAACTAATACCATAATTAAAACAACAGCACTTAGGATATATAACTTCCCTTGAGTGAAAAAATCTTTATAGCGTAATAAAAATTGTTCCAATAAAACCACTCCTCCACttt                                                                                                                                  >  2:337272/1‑141 (MQ=255)
      taATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtat                                                                                                                                >  1:351858/1‑141 (MQ=255)
       aaTCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTtata                                                                                                                               >  2:692389/1‑141 (MQ=255)
           atcTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACg                                                                                                                           <  1:570619/141‑1 (MQ=255)
           atcTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACg                                                                                                                           <  1:570787/141‑1 (MQ=255)
                     cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgag                                                                                                                 >  2:205082‑M2/1‑138 (MQ=255)
                     cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACAACTCCTCACCTTTATACACGTCTGAGCgag                                                                                                                 <  1:242189‑M2/141‑4 (MQ=255)
                        aaTATAAAACCAATTAATACCAAAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtgg                                                                                                              >  1:368000‑M2/1‑135 (MQ=255)
                              aaaCCAATTAATACCATAATTAAAACGACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgaggggttatac                                                                                                        <  1:281522‑M2/141‑13 (MQ=255)
                              aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACAGGTCTGAGGGAGTGGATTTAc                                                                                                        >  2:167060/1‑141 (MQ=255)
                              aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTAc                                                                                                        >  1:167193/1‑141 (MQ=255)
                                         tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCTATCCTCAGCTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                             <  1:593920/141‑1 (MQ=255)
                                         tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                             >  1:212928/1‑141 (MQ=255)
                                          aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAAGTTGAGagtggttttattgtatcaatttt                                                                                              <  2:667709‑M2/141‑24 (MQ=255)
                                          aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACACCTCCTCTTTATAACCTTCTGAGCgagtggttttattgtatcaatttt                                                                                            <  1:667709‑M2/141‑25 (MQ=255)
                                           ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAAGTTGAGagtggttttattgtatcaattttt                                                                                             <  2:53944‑M2/141‑25 (MQ=255)
                                           ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTTGTTTTACTTTTATTTTTTCg                                                                                           <  1:526351/141‑1 (MQ=255)
                                           ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTGTTACTTTTATTTTTTCg                                                                                           >  2:255877/1‑141 (MQ=255)
                                           ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACACCTCAACTTTATACACGTCTGAGCgagtggttttattgtatcaattttt                                                                                           <  1:53944‑M2/141‑26 (MQ=255)
                                                   aaaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaa                                                                                   >  1:784861/1‑141 (MQ=255)
                                                      acaacaGCACTTAGAATATATAAATCCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAacac                                                                                >  2:835572/1‑141 (MQ=255)
                                                          caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAta                                                                            >  2:369674/1‑140 (MQ=255)
                                                          caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                            <  1:692389/141‑1 (MQ=255)
                                                          caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                            >  2:37517/1‑141 (MQ=255)
                                                              ccTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                                        <  1:152052/140‑1 (MQ=255)
                                                                 tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTGCATTGTAAAACAATCTTTCTGc                                                                     >  2:243011/1‑141 (MQ=255)
                                                                 tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                     >  2:862325/1‑141 (MQ=255)
                                                                 tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                     <  2:351858/141‑1 (MQ=255)
                                                                 tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                     <  1:469930/141‑1 (MQ=255)
                                                                   gAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCAt                                                                   <  1:359464/141‑1 (MQ=255)
                                                                       atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                               <  1:781113/141‑1 (MQ=255)
                                                                        tataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCa                                                              >  2:794556/1‑141 (MQ=255)
                                                                            aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCACATTTATACACGTCTGAGCGAGGGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTAt                                                          <  1:413158/141‑1 (MQ=255)
                                                                                  aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt                                                    >  1:868382/1‑141 (MQ=255)
                                                                                  aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAACCTTTCTGCACCTTCAtaaactaaac                                                    >  2:212410/1‑132 (MQ=255)
                                                                                   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                   <  1:83703/141‑1 (MQ=255)
                                                                                   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                   <  1:94863/141‑1 (MQ=255)
                                                                                    tgtgTTAAAATATTTTTATAGCTTAAAAAAAATTGATACAGTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTATTTTTATTTATAAAAAAAAAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                  <  2:476900/138‑1 (MQ=255)
                                                                                    tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                  <  2:476796/141‑1 (MQ=255)
                                                                                     gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCCATGAAAAACAATCTTTCTGCATCTTCTTTATGTTCATCtt                                                 >  1:103691/1‑140 (MQ=255)
                                                                                     gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCta                                                 <  1:662500/141‑1 (MQ=255)
                                                                                       gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                               >  1:588803/1‑141 (MQ=255)
                                                                                        ttAAAAAATCTTCATAGCGGAAGAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                              <  1:216144/141‑1 (MQ=255)
                                                                                           aaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaa                                           >  1:234100/1‑141 (MQ=255)
                                                                                                         cGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtt                             <  1:324955/141‑1 (MQ=255)
                                                                                                          ttaacaaAAATTGATACAATAAAACCGCGCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                            <  1:549901/140‑1 (MQ=255)
                                                                                                          gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                            <  1:605327/141‑1 (MQ=255)
                                                                                                           taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                           >  1:626666/1‑141 (MQ=255)
                                                                                                           taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                           >  1:733410/1‑141 (MQ=255)
                                                                                                               aaaaaTTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggtgtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatgg                          <  1:53944‑M1/141‑117 (MQ=255)
                                                                                                               aaaaaTTGATACAATAAAACCACTCctcaactttatacacgtctgagcgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatgg                          <  2:53944‑M1/141‑117 (MQ=255)
                                                                                                                aaaaTTGATACAATAAAACCACTCgctcagaaggttataaagaggaggtgtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggt                         <  1:667709‑M1/141‑118 (MQ=255)
                                                                                                                aaaaTTGATACAATAAAACCACTCctcaactttatacacgtctgagcgagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggt                         <  2:667709‑M1/141‑118 (MQ=255)
                                                                                                                 aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCATTAAATGTTTAAACAtt                     >  2:509458/1‑140 (MQ=255)
                                                                                                                 aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg                     >  2:705952/1‑141 (MQ=255)
                                                                                                                   atggagaCAATAAAACCCCACCTCCACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAACCAGTAAATGTTTCAACATGtt                   <  1:555075/135‑1 (MQ=255)
                                                                                                                    ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGttt                  >  1:693903/1‑141 (MQ=255)
                                                                                                                    ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAGTATGTTCATCTATATTAAAATCAGTAAATGTTTCACCATGttt                  >  1:80476/1‑141 (MQ=255)
                                                                                                                        tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa              <  1:137854/141‑1 (MQ=255)
                                                                                                                        tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTGCAACATGTTTaaaa              <  1:450418/141‑1 (MQ=255)
                                                                                                                        aaCAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa              <  1:121003/140‑1 (MQ=255)
                                                                                                                            gtataaccccTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgtcgttttaattatggtattaattggttt             <  1:281522‑M1/137‑130 (MQ=255)
                                                                                                                            aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCaa          >  2:22664/1‑141 (MQ=255)
                                                                                                                             tagaaCCCCGCCTCACCTTCATACACGTCTGAGCGAGTGGTTTTACTTTTCTTTTTTCGCAATGAAAAACAATCTTACTGCATCTTCATGATGTGCATCTATATTAAAATCTGCAAATGTTTCAACATTTTTAAAACCAAc         <  2:147378/138‑1 (MQ=255)
                                                                                                                             tAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:191671/141‑1 (MQ=255)
                                                                                                                             tAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:825840/141‑1 (MQ=255)
                                                                                                                             tAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:420137/141‑1 (MQ=255)
                                                                                                                             tAAAACCACCCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc         <  1:289888/141‑1 (MQ=255)
                                                                                                                             atacaCCACTCTTAAACTTTATACACGTCTGAGCGAGTGGTTTTACTGTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTACAATCCGTATACGTTTCAACATGTTTAAAACCAAc         <  2:184221/137‑1 (MQ=255)
                                                                                                                               aaaCCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACtt       <  1:746906/141‑1 (MQ=255)
                                                                                                                                 aCCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGa     >  2:653205/1‑141 (MQ=255)
                                                                                                                                  ccACTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattttggtattaattggttttatatt       >  1:368000‑M1/1‑6 (MQ=255)
                                                                                                                                   cACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGc   <  1:320662/141‑1 (MQ=255)
                                                                                                                                    aCTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt  >  1:141600/1‑141 (MQ=255)
                                                                                                                                    aCTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt  >  2:33677/1‑141 (MQ=255)
                                                                                                                                     cTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggtattaattggttttatattctg    >  2:205082‑M1/1‑3 (MQ=255)
                                                                                                                                     cTCgctcagacgtgtataaaggtgaggagttgttttattgtatcaatttttattacgctataaagattttttaactcaatggaagttatatattctaagtgctgttgttttaattatggtattaattggttttatattctg    <  1:242189‑M1/141‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                            
GAAGTATAATCATCTTGTCTCCAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCT  >  CP000730/1702132‑1702404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.