New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 170226759 (0.790)4 (0.060) 4/238 NT 6.4% intergenic (‑2/+38) comEA/USA300HOU_1592 possible competence protein comEA/hypothetical protein
?CP000730 = 1702290 64 (0.940)intergenic (‑25/+15) comEA/USA300HOU_1592 possible competence protein comEA/hypothetical protein

CAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTTCATC  >  CP000730/1702153‑1702430
                                                                                                                                            |                                                                                                                                            
cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgag                                                                                                                                           >  2:205082‑M2/1‑138 (MQ=255)
cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACAACTCCTCACCTTTATACACGTCTGAGCgag                                                                                                                                           <  1:242189‑M2/141‑4 (MQ=255)
   aaTATAAAACCAATTAATACCAAAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtgg                                                                                                                                        >  1:368000‑M2/1‑135 (MQ=255)
         aaaCCAATTAATACCATAATTAAAACGACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgaggggttatac                                                                                                                                  <  1:281522‑M2/141‑13 (MQ=255)
         aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACAGGTCTGAGGGAGTGGATTTAc                                                                                                                                  >  2:167060/1‑141 (MQ=255)
         aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTAc                                                                                                                                  >  1:167193/1‑141 (MQ=255)
                    tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCTATCCTCAGCTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                                                       <  1:593920/141‑1 (MQ=255)
                    tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                                                       >  1:212928/1‑141 (MQ=255)
                     aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAAGTTGAGagtggttttattgtatcaatttt                                                                                                                        <  2:667709‑M2/141‑24 (MQ=255)
                     aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACACCTCCTCTTTATAACCTTCTGAGCgagtggttttattgtatcaatttt                                                                                                                      <  1:667709‑M2/141‑25 (MQ=255)
                      ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAAGTTGAGagtggttttattgtatcaattttt                                                                                                                       <  2:53944‑M2/141‑25 (MQ=255)
                      ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTTGTTTTACTTTTATTTTTTCg                                                                                                                     <  1:526351/141‑1 (MQ=255)
                      ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTGTTACTTTTATTTTTTCg                                                                                                                     >  2:255877/1‑141 (MQ=255)
                      ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACACCTCAACTTTATACACGTCTGAGCgagtggttttattgtatcaattttt                                                                                                                     <  1:53944‑M2/141‑26 (MQ=255)
                              aaaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaa                                                                                                             >  1:784861/1‑141 (MQ=255)
                                 acaacaGCACTTAGAATATATAAATCCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAacac                                                                                                          >  2:835572/1‑141 (MQ=255)
                                     caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAta                                                                                                      >  2:369674/1‑140 (MQ=255)
                                     caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                                                      >  2:37517/1‑141 (MQ=255)
                                     caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                                                      <  1:692389/141‑1 (MQ=255)
                                         ccTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                                                                  <  1:152052/140‑1 (MQ=255)
                                            tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTGCATTGTAAAACAATCTTTCTGc                                                                                               >  2:243011/1‑141 (MQ=255)
                                            tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                                               <  2:351858/141‑1 (MQ=255)
                                            tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                                               >  2:862325/1‑141 (MQ=255)
                                            tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                                               <  1:469930/141‑1 (MQ=255)
                                              gAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCAt                                                                                             <  1:359464/141‑1 (MQ=255)
                                                  atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                                                         <  1:781113/141‑1 (MQ=255)
                                                   tataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCa                                                                                        >  2:794556/1‑141 (MQ=255)
                                                       aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCACATTTATACACGTCTGAGCGAGGGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTAt                                                                                    <  1:413158/141‑1 (MQ=255)
                                                             aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt                                                                              >  1:868382/1‑141 (MQ=255)
                                                             aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAACCTTTCTGCACCTTCAtaaactaaac                                                                              >  2:212410/1‑132 (MQ=255)
                                                              ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                                             <  1:83703/141‑1 (MQ=255)
                                                              ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                                             <  1:94863/141‑1 (MQ=255)
                                                               tgtgTTAAAATATTTTTATAGCTTAAAAAAAATTGATACAGTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTATTTTTATTTATAAAAAAAAAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                                            <  2:476900/138‑1 (MQ=255)
                                                               tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                                            <  2:476796/141‑1 (MQ=255)
                                                                gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCCATGAAAAACAATCTTTCTGCATCTTCTTTATGTTCATCtt                                                                           >  1:103691/1‑140 (MQ=255)
                                                                gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCta                                                                           <  1:662500/141‑1 (MQ=255)
                                                                  gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                                                         >  1:588803/1‑141 (MQ=255)
                                                                   ttAAAAAATCTTCATAGCGGAAGAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                                                        <  1:216144/141‑1 (MQ=255)
                                                                      aaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaa                                                                     >  1:234100/1‑141 (MQ=255)
                                                                                    cGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtt                                                       <  1:324955/141‑1 (MQ=255)
                                                                                     ttaacaaAAATTGATACAATAAAACCGCGCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                                                      <  1:549901/140‑1 (MQ=255)
                                                                                     gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                                                      <  1:605327/141‑1 (MQ=255)
                                                                                      taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                                                     >  1:626666/1‑141 (MQ=255)
                                                                                      taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                                                     >  1:733410/1‑141 (MQ=255)
                                                                                            aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCATTAAATGTTTAAACAtt                                               >  2:509458/1‑140 (MQ=255)
                                                                                            aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg                                               >  2:705952/1‑141 (MQ=255)
                                                                                              atggagaCAATAAAACCCCACCTCCACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAACCAGTAAATGTTTCAACATGtt                                             <  1:555075/135‑1 (MQ=255)
                                                                                               ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGttt                                            >  1:693903/1‑141 (MQ=255)
                                                                                               ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAGTATGTTCATCTATATTAAAATCAGTAAATGTTTCACCATGttt                                            >  1:80476/1‑141 (MQ=255)
                                                                                                   tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa                                        <  1:137854/141‑1 (MQ=255)
                                                                                                   tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTGCAACATGTTTaaaa                                        <  1:450418/141‑1 (MQ=255)
                                                                                                   aaCAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa                                        <  1:121003/140‑1 (MQ=255)
                                                                                                       aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCaa                                    >  2:22664/1‑141 (MQ=255)
                                                                                                        tagaaCCCCGCCTCACCTTCATACACGTCTGAGCGAGTGGTTTTACTTTTCTTTTTTCGCAATGAAAAACAATCTTACTGCATCTTCATGATGTGCATCTATATTAAAATCTGCAAATGTTTCAACATTTTTAAAACCAAc                                   <  2:147378/138‑1 (MQ=255)
                                                                                                        tAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:825840/141‑1 (MQ=255)
                                                                                                        tAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:191671/141‑1 (MQ=255)
                                                                                                        tAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:420137/141‑1 (MQ=255)
                                                                                                        tAAAACCACCCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:289888/141‑1 (MQ=255)
                                                                                                        atacaCCACTCTTAAACTTTATACACGTCTGAGCGAGTGGTTTTACTGTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTACAATCCGTATACGTTTCAACATGTTTAAAACCAAc                                   <  2:184221/137‑1 (MQ=255)
                                                                                                          aaaCCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACtt                                 <  1:746906/141‑1 (MQ=255)
                                                                                                            aCCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGa                               >  2:653205/1‑141 (MQ=255)
                                                                                                              cACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGc                             <  1:320662/141‑1 (MQ=255)
                                                                                                               aCTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt                            >  1:141600/1‑141 (MQ=255)
                                                                                                               aCTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt                            >  2:33677/1‑141 (MQ=255)
                                                                                                                tcgccccAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt                            <  2:212928/135‑1 (MQ=255)
                                                                                                                      cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCCTCTATATTAAAATCAGTAAATGTTTCAACATGTGTAAAACCAACTTGAGCTAACCaa                      >  1:324727/1‑141 (MQ=255)
                                                                                                                      cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCaa                      >  2:545989/1‑141 (MQ=255)
                                                                                                                       aaCTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAg                     >  1:421814/1‑141 (MQ=255)
                                                                                                                            ttATACACGTCCGAGCGAATGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAACTCAGTTAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACaa                 <  1:167060/141‑1 (MQ=255)
                                                                                                                               ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAat               >  1:811513/1‑141 (MQ=255)
                                                                                                                               ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAat               >  2:295924/1‑141 (MQ=255)
                                                                                                                               ataCACGGCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTAATCTATATTAAACTCAGTAAACGTTTCAACTTGTTTAAAACCAACTTGAGCTAACCAAGACAAat               <  2:231733/141‑1 (MQ=255)
                                                                                                                                taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCACCTTGAGCTAACCAAGACAAata              >  1:324747/1‑141 (MQ=255)
                                                                                                                                 acacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCCTTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCANCTTGAGCTAACCAAGACAAatat             >  1:490557/1‑141 (MQ=255)
                                                                                                                                        tGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCtttt      >  2:463524/1‑141 (MQ=255)
                                                                                                                                         gAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATATTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGACTGTtc     >  2:86901/1‑141 (MQ=255)
                                                                                                                                           gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTtcat   >  1:623474/1‑141 (MQ=255)
                                                                                                                                            cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTtcatc  >  1:271127/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTTCATC  >  CP000730/1702153‑1702430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.