New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1702267	59 (0.790)	4 (0.060)	4/238	NT	6.4%	intergenic (‑2/+38)	comEA/USA300HOU_1592	possible competence protein comEA/hypothetical protein
	?	CP000730	= 1702290	64 (0.940)					intergenic (‑25/+15)	comEA/USA300HOU_1592	possible competence protein comEA/hypothetical protein

CAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTTCATC  >  CP000730/1702153‑1702430                                                                                                                                             |                                                                                                                                             cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCgag                                                                                                                                           >  2:205082‑M2/1‑138 (MQ=255) cAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACAACTC‑CTCA‑CCTT‑TATACACGTCTGAGCgag                                                                                                                                           <  1:242189‑M2/141‑4 (MQ=255)    aaTATAAAACCAATTAATACCAAAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCgagtgg                                                                                                                                        >  1:368000‑M2/1‑135 (MQ=255)          aaaCCAATTAATACCATAATTAAAACGACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCgaggggttatac                                                                                                                                  <  1:281522‑M2/141‑13 (MQ=255)          aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACAGGTCTGAGGGAGTGGATTTAc                                                                                                                                  >  2:167060/1‑141 (MQ=255)          aaaCCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTAc                                                                                                                                  >  1:167193/1‑141 (MQ=255)                     tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCTATC‑CTCA‑GCTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                                                       <  1:593920/141‑1 (MQ=255)                     tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTAtttttt                                                                                                                       >  1:212928/1‑141 (MQ=255)                      aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAA‑GT‑TGAGagtggttttattgtatcaatttt                                                                                                                        <  2:667709‑M2/141‑24 (MQ=255)                      aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACAC‑CTCC‑TCTT‑TATAACCTTCTGAGCgagtggttttattgtatcaatttt                                                                                                                      <  1:667709‑M2/141‑25 (MQ=255)                       ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCGCTCAGACGTGTATAAA‑GT‑TGAGagtggttttattgtatcaattttt                                                                                                                       <  2:53944‑M2/141‑25 (MQ=255)                       ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTTGTTTTACTTTTATTTTTTCg                                                                                                                     <  1:526351/141‑1 (MQ=255)                       ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTGTTACTTTTATTTTTTCg                                                                                                                     >  2:255877/1‑141 (MQ=255)                       ccATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACAC‑CTCA‑ACTT‑TATACACGTCTGAGCgagtggttttattgtatcaattttt                                                                                                                     <  1:53944‑M2/141‑26 (MQ=255)                               aaaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaa                                                                                                             >  1:784861/1‑141 (MQ=255)                                  acaacaGCACTTAGAATATATAAATCCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAacac                                                                                                          >  2:835572/1‑141 (MQ=255)                                      caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAta                                                                                                      >  2:369674/1‑140 (MQ=255)                                      caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                                                      >  2:37517/1‑141 (MQ=255)                                      caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATc                                                                                                      <  1:692389/141‑1 (MQ=255)                                          ccTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                                                                  <  1:152052/140‑1 (MQ=255)                                             tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTTGCATTGTAAAACAATCTTTCTGc                                                                                               >  2:243011/1‑141 (MQ=255)                                             tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                                               <  2:351858/141‑1 (MQ=255)                                             tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                                               >  2:862325/1‑141 (MQ=255)                                             tAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                                                               <  1:469930/141‑1 (MQ=255)                                               gAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCAt                                                                                             <  1:359464/141‑1 (MQ=255)                                                   atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                                                         <  1:781113/141‑1 (MQ=255)                                                    tataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCa                                                                                        >  2:794556/1‑141 (MQ=255)                                                        aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑CATT‑TATACACGTCTGAGCGAGGGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTAt                                                                                    <  1:413158/141‑1 (MQ=255)                                                              aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAt                                                                              >  1:868382/1‑141 (MQ=255)                                                              aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAACCTTTCTGCACCTTCAtaaactaaac                                                                              >  2:212410/1‑132 (MQ=255)                                                               ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                                             <  1:83703/141‑1 (MQ=255)                                                               ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATc                                                                             <  1:94863/141‑1 (MQ=255)                                                                tgtgTTAAAATATTTTTATAGCTTAAAAAAAATTGATACAGTAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTATTTTTATTTATAAAAAAAAAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                                            <  2:476900/138‑1 (MQ=255)                                                                tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                                                            <  2:476796/141‑1 (MQ=255)                                                                 gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCCATGAAAAACAATCTTTCTGCATCTTCTTTATGTTCATCtt                                                                           >  1:103691/1‑140 (MQ=255)                                                                 gAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCta                                                                           <  1:662500/141‑1 (MQ=255)                                                                   gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                                                         >  1:588803/1‑141 (MQ=255)                                                                    ttAAAAAATCTTCATAGCGGAAGAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                                                        <  1:216144/141‑1 (MQ=255)                                                                       aaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaa                                                                     >  1:234100/1‑141 (MQ=255)                                                                                     cGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGtt                                                       <  1:324955/141‑1 (MQ=255)                                                                                      ttaacaaAAATTGATACAATAAAACCGCGC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                                                      <  1:549901/140‑1 (MQ=255)                                                                                      gTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                                                      <  1:605327/141‑1 (MQ=255)                                                                                       taataaAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                                                     >  1:626666/1‑141 (MQ=255)                                                                                       taataaAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc                                                     >  1:733410/1‑141 (MQ=255)                                                                                             aaaTTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCATTAAATGTTTAAACAtt                                               >  2:509458/1‑140 (MQ=255)                                                                                             aaaTTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg                                               >  2:705952/1‑141 (MQ=255)                                                                                               atggagaCAATAAAACCCCAC‑CTCC‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAACCAGTAAATGTTTCAACATGtt                                             <  1:555075/135‑1 (MQ=255)                                                                                                ttGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGttt                                            >  1:693903/1‑141 (MQ=255)                                                                                                ttGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAGTATGTTCATCTATATTAAAATCAGTAAATGTTTCACCATGttt                                            >  1:80476/1‑141 (MQ=255)                                                                                                    tACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa                                        <  1:137854/141‑1 (MQ=255)                                                                                                    tACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTGCAACATGTTTaaaa                                        <  1:450418/141‑1 (MQ=255)                                                                                                    aaCAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaaaa                                        <  1:121003/140‑1 (MQ=255)                                                                                                        aTAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCaa                                    >  2:22664/1‑141 (MQ=255)                                                                                                         tagaaCCCCGC‑CTCA‑CCTT‑CATACACGTCTGAGCGAGTGGTTTTACTTTTCTTTTTTCGCAATGAAAAACAATCTTACTGCATCTTCATGATGTGCATCTATATTAAAATCTGCAAATGTTTCAACATTTTTAAAACCAAc                                   <  2:147378/138‑1 (MQ=255)                                                                                                         tAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:825840/141‑1 (MQ=255)                                                                                                         tAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:191671/141‑1 (MQ=255)                                                                                                         tAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:420137/141‑1 (MQ=255)                                                                                                         tAAAACCACCC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAAc                                   <  1:289888/141‑1 (MQ=255)                                                                                                         atacaCCACTC‑TTAA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTGTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTACAATCCGTATACGTTTCAACATGTTTAAAACCAAc                                   <  2:184221/137‑1 (MQ=255)                                                                                                           aaaCCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACtt                                 <  1:746906/141‑1 (MQ=255)                                                                                                             aCCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGa                               >  2:653205/1‑141 (MQ=255)                                                                                                               cACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGc                             <  1:320662/141‑1 (MQ=255)                                                                                                                aCTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt                            >  1:141600/1‑141 (MQ=255)                                                                                                                aCTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt                            >  2:33677/1‑141 (MQ=255)                                                                                                                 tcgccccA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCt                            <  2:212928/135‑1 (MQ=255)                                                                                                                       cA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCCTCTATATTAAAATCAGTAAATGTTTCAACATGTGTAAAACCAACTTGAGCTAACCaa                      >  1:324727/1‑141 (MQ=255)                                                                                                                       cA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCaa                      >  2:545989/1‑141 (MQ=255)                                                                                                                        a‑aCTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAg                     >  1:421814/1‑141 (MQ=255)                                                                                                                             t‑tATACACGTCCGAGCGAATGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAACTCAGTTAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACaa                 <  1:167060/141‑1 (MQ=255)                                                                                                                                ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAat               >  1:811513/1‑141 (MQ=255)                                                                                                                                ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAat               >  2:295924/1‑141 (MQ=255)                                                                                                                                ataCACGGCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTAATCTATATTAAACTCAGTAAACGTTTCAACTTGTTTAAAACCAACTTGAGCTAACCAAGACAAat               <  2:231733/141‑1 (MQ=255)                                                                                                                                 taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCACCTTGAGCTAACCAAGACAAata              >  1:324747/1‑141 (MQ=255)                                                                                                                                  acacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCCTTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCANCTTGAGCTAACCAAGACAAatat             >  1:490557/1‑141 (MQ=255)                                                                                                                                         tGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCtttt      >  2:463524/1‑141 (MQ=255)                                                                                                                                          gAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATATTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGACTGTtc     >  2:86901/1‑141 (MQ=255)                                                                                                                                            gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTtcat   >  1:623474/1‑141 (MQ=255)                                                                                                                                             cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTtcatc  >  1:271127/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             CAGAATATAAAACCAATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTC‑CTCA‑ACTT‑TATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAACCAACTTGAGCTAACCAAGACAAATATGTCTTTTCATC  >  CP000730/1702153‑1702430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.