New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 209735178 (1.050)3 (0.040) 3/242 NT 3.8% coding (69/1485 nt) USA300HOU_1958 hypothetical bacteriophage protein
?CP000730 = 2097358 80 (1.150)coding (62/1485 nt) USA300HOU_1958 hypothetical bacteriophage protein

CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2097203‑2097351
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagggt‑TTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTCACA  <  CP000730/2097358‑2097221
                                                                                                                                                                                                                                                                                                
CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGCCCCCGAACGTCCATCTACATTTTCAGTATTTAAAACATAATTAA                                                                                                                                                     <  1:427400/141‑1
CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAA                                                                                                                                                     >  1:731867/1‑141
     GTTTTAAAACCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATGAAAACTATAAGATTCAAGCCTACGCCCTTTATGTATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTCAAAGAG                                                                                                                                                <  2:544473/141‑1
       TTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGG                                                                                                                                              <  2:271326/141‑1
       TTTAAAGCCGTTGGGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCTGTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGG                                                                                                                                              <  2:464970/141‑1
        TTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT                                                                                                                                             <  2:108154/141‑1
                         TAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGTTTGAAATACCCTCTTTT                                                                                                                           <  2:692933/141‑1
                                                                                                                  CATTTTCAGTTTTTAAAACATAATTAAAAGAGGGTATTTCAAACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACC                                  >  2:100622/1‑141
                                                                                                                         AGTTTTTAAAACATAATTAAAAGAGGGTATTTCAAACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGGTATACCTTTGGTG                           >  2:550640/1‑141
                                                                                                                                               GAGGGTTTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTC     >  2:777110/1‑141
                                                                                                                                               GAGGGTGTGAAATTCCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTCGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTGTGATATACCTTTGGTGGTACGTAATGACTATTTATCTC     <  2:276834/141‑1
                                                                                                                                                  GGTTTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTCACA  >  2:437935/1‑141
                                                                                                                                                                                                                                                                                                
CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2097203‑2097351
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagggt‑TTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTCACA  <  CP000730/2097358‑2097221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.