New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 285454950 (1.260)3 (0.080) 3/254 NT 6.0% intergenic (+247/+166) USA300HOU_2696/rarD DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter
?CP000730 = 2854587 46 (1.190)intergenic (+285/+128) USA300HOU_2696/rarD DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter

AGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2854453‑2854549
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacTTTCGTTGAATTCGCAATTAAAATGAATTTAAACGAAGGTGTTTTTTGTATGATGATTTATGAGGGCATACGTAATGTTAATCAATGAAGCGGAATAGTATAGAAA  <  CP000730/2854587‑2854482
                                                                                                                                                                                                           
AGTCATTACGTAACTTCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGCATGTCCTCATAAAAAAAAAAAAAAAAAACACTTTCGTTGAATTCGCAATTAAAATGAATTTAAACGAAGGTGTTT                                                                <  2:169191/141‑1
                             TTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACTTTCGTTGAATTCGCAATTAAAATGAATTTAACCGAAGGTGTTTTTTGTATGATGATTTATAAGGGGATACGg                                   >  2:243070/1‑140
                                                              ACGTATGCCCTCATAAATCATCATACAAACAACACTTTCGTTGAATTCGCAATTAAAATGAATTTAAACGAAGGTGTTTTTTGTATGATGATTCATGAGGGCATACGTAATGTTAATCAATGAAGCGGAATAGTATAGAAA  <  1:243070/141‑1
                                                                                                                                                                                                           
AGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2854453‑2854549
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacTTTCGTTGAATTCGCAATTAAAATGAATTTAAACGAAGGTGTTTTTTGTATGATGATTTATGAGGGCATACGTAATGTTAATCAATGAAGCGGAATAGTATAGAAA  <  CP000730/2854587‑2854482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.