New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2854549	50 (1.260)	3 (0.080)	3/254	NT	6.0%	intergenic (+247/+166)	USA300HOU_2696/rarD	DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter
	?	CP000730	= 2854587	46 (1.190)					intergenic (+285/+128)	USA300HOU_2696/rarD	DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter

CATTGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAAC  >  CP000730/2854416‑2854689                                                                                                                                      |                                                                                                                                             cATTGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGtt                                                                                                                                       <  1:136385/141‑1 (MQ=255)   ttGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTa                                                                                                                                     <  1:326043/141‑1 (MQ=255)          cTTCGCTGAAAATTTGTATAAAGATTTAAGGCATTACGTAACATCACATAAGATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGCATGCCCTCATAAATCCTCATGCAAAAAACACCTTCGTTTCAATTAAt                                                                                                                              >  1:183410/1‑141 (MQ=255)           ttCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAtt                                                                                                                             <  1:378951/141‑1 (MQ=255)           ttCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAtt                                                                                                                             <  1:378762/141‑1 (MQ=255)           ttCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAtt                                                                                                                             <  1:196841/141‑1 (MQ=255)            tCACTGAAAATTTGTATAAAGATTTAAGTCATTTCGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTTATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAttt                                                                                                                            <  1:56038/141‑1 (MQ=255)              aCTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATGATCATACAAAAAACACCTTCGTTTAAATTCATTTTa                                                                                                                          >  2:347771/1‑141 (MQ=255)              aCTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATAACATAAACACCATGTCTGTAATATCCCGCTTCATTGATTAACATTACGTATGTCGTCATAAATCTTCATACAAAAAACACCTCCGTTTAAGATCATTTTa                                                                                                                          >  2:109014/1‑141 (MQ=255)               cTGAAAATTTGTATATAGATACAGAGCACTACGTAACGTTAACTCAAAAGTTTTGCTATACTATTCCGCTTCATTGATGAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTaa                                                                                                                         <  1:104485/141‑1 (MQ=255)                tGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAAt                                                                                                                        >  1:392198/1‑141 (MQ=255)                  aaaaTTTGTATAAAGCTTTAAGTCATTACGTAACACCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTg                                                                                                                      <  1:294825/141‑1 (MQ=255)                         gTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTGATTTTAAATGCGAAtta                                                                                                               >  1:146077/1‑140 (MQ=255)                         gTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTCCAATACTATTCCGCTACATCGATTAAAATTACATATGCCCACATAAATCATCATACAAAATACACCTTCGTTTAAATTCATTTTAATTGTGAATTc                                                                                                               >  2:40425/1‑141 (MQ=255)                          tataAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCa                                                                                                              >  1:41341/1‑141 (MQ=255)                            taAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAAc                                                                                                            <  2:22514/141‑1 (MQ=255)                                      aGTCATTACGTACCATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCTTCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGTGAATTCAACGAAAGTGCCt                                                                                                  <  2:258037/141‑1 (MQ=255)                                      aGTCATTACGTAACTTCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGCATGTCCTCATAAAAAAAAAAAAAAAAAACACtttcgttgaattcgcaattaaaatgaatttaaacgaaggtgttt                                                                                                  <  2:169191‑M1/141‑45 (MQ=255)                                      aGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCt                                                                                                  >  2:248679/1‑141 (MQ=255)                                            tACGAAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCAAATAAATGATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTc                                                                                            <  1:337673/141‑1 (MQ=255)                                              cGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTGTTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTTTTTCat                                                                                          >  2:71067/1‑141 (MQ=255)                                               gTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCata                                                                                         <  2:149959/141‑1 (MQ=255)                                                tAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCatat                                                                                        >  2:274263/1‑141 (MQ=255)                                                 aaCATCTCATAATATTCATTTCTGTACTATTCCGCTTTATGGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATAtt                                                                                       <  2:89489/141‑1 (MQ=255)                                                      cacaTATCATACATTTCTATACTATTCCGCTTCAATGATTACAATTACGTATGCCCTCATAAATCATCATACAAAAAACTCCTTCGTTTAAATTCATTTTAATTGCTAATTCAACGAAAGTGCCTTATTGCATATTTAATg                                                                                  <  2:310090/141‑1 (MQ=255)                                                             aaTACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                           <  1:346984/141‑1 (MQ=255)                                                             aaTACATTTCTATACTATTCCGCTTCATTGAGTAACATTACATGAATCAACGGGAGTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                           <  1:333781/141‑1 (MQ=255)                                                               tACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAtt                                                                         <  1:392205/141‑1 (MQ=255)                                                                aCATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAttt                                                                        <  2:169495/141‑1 (MQ=255)                                                                  tattCTATCCTATTCCGCTTCATGGATTAACTTTTCGTATCCCCTCATAAATCATCATAAAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtat                                                                      <  2:35444/139‑1 (MQ=255)                                                                   tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATGAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttgtttgtatgatgatttatgagggcatacgt                                                                     <  1:243070‑M2/141‑36 (MQ=255)                                                                   tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACtttcgttgaattcgcaattaaaatgaatttaaccgaaggtgttttttgtatgatgatttataaggggatacgg                                                                     >  2:243070‑M1/1‑68 (MQ=255)                                                                   tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtata                                                                     >  2:28918/1‑141 (MQ=255)                                                                         aaatATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTg                                                               <  2:70291/138‑1 (MQ=255)                                                                           cTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTc                                                             >  1:346346/1‑141 (MQ=255)                                                                              ttCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACt                                                          <  2:70689/141‑1 (MQ=255)                                                                                ccGCTTCATTGATTAATATTACGTATGCCCTCATAAAACAACAAACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGt                                                        <  2:3590/141‑1 (MQ=255)                                                                                   cTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTAc                                                     >  1:257525/1‑141 (MQ=255)                                                                                     tCATTGATTAACATTACGTGTGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAACGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTgtcactgtcactc                                                   >  2:237328/1‑140 (MQ=255)                                                                                     tCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACtc                                                   >  1:80296/1‑140 (MQ=255)                                                                                       aTTGATTAACATTACGTATTCCCTCATAAATCATCATACAAAAAACACCTTCGCTCAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTACATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGca                                                 <  2:252174/141‑1 (MQ=255)                                                                                            ttAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACAt                                            >  1:169376/1‑141 (MQ=255)                                                                                                  ttACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCa                                      >  1:214201/1‑141 (MQ=255)                                                                                                    ccgTATCCCCTTATAAATCATCATACAAAAAACACCTTCGGTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttgtatgatgatttatgagggcatacgtaatgttaatcaatgaagcggaatagtatagaaa                                    >  2:243070‑M2/2‑73 (MQ=255)                                                                                                    aCGTATGCCCTCATAAATCATCATACAAACAACACtttcgttgaattcgcaattaaaatgaatttaaacgaaggtgttttttgtatgatgattcatgagggcatacgtaatgttaatcaatgaagcggaatagtatagaaa                                    <  1:243070‑M1/141‑107 (MQ=255)                                                                                                     cGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGCATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCGGTACCTGTTACTCCACACATACCTccgct                                   >  2:8701/1‑137 (MQ=255)                                                                                                      gTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGtct                                  <  1:274263/141‑1 (MQ=255)                                                                                                             cTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtca                           <  1:78672/141‑1 (MQ=255)                                                                                                                aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCCCTCATGCCTCCGTCTCACCtcatcc                        >  1:36781/1‑140 (MQ=255)                                                                                                                aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtcatca                        <  2:68205/141‑1 (MQ=255)                                                                                                                   aaTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGACTTCTTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTCCTGCACACATACCTCAGTATCACCTCATCATGa                     >  2:172173/1‑141 (MQ=255)                                                                                                                            aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa            >  2:219551/1‑141 (MQ=255)                                                                                                                            aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa            <  2:59260/141‑1 (MQ=255)                                                                                                                             cAAAAACCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat           <  1:147148/141‑1 (MQ=255)                                                                                                                             cAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat           <  1:24382/141‑1 (MQ=255)                                                                                                                                 aaaCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttttttttttttttatgaggacatgcgtaatgttaatcaatgaagcggaatagtatagaaatgtattttatgtgaagttacgtaatgact       <  2:169191‑M2/141‑98 (MQ=255)                                                                                                                                   acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa     <  1:206380/141‑1 (MQ=255)                                                                                                                                   acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa     <  2:430124/141‑1 (MQ=255)                                                                                                                                     acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaaaa   >  2:144271/1‑141 (MQ=255)                                                                                                                                     acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTAACCTCATCATGACACAAAGGATATTGaaca   >  2:364879/1‑139 (MQ=255)                                                                                                                                      ccTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAac  >  1:140683/1‑141 (MQ=255)                                                                                                                                      |                                                                                                                                             CATTGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAAC  >  CP000730/2854416‑2854689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.