New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 285454950 (1.260)3 (0.080) 3/254 NT 6.0% intergenic (+247/+166) USA300HOU_2696/rarD DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter
?CP000730 = 2854587 46 (1.190)intergenic (+285/+128) USA300HOU_2696/rarD DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter

CATTGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAAC  >  CP000730/2854416‑2854689
                                                                                                                                     |                                                                                                                                            
cATTGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGtt                                                                                                                                       <  1:136385/141‑1 (MQ=255)
  ttGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTa                                                                                                                                     <  1:326043/141‑1 (MQ=255)
         cTTCGCTGAAAATTTGTATAAAGATTTAAGGCATTACGTAACATCACATAAGATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGCATGCCCTCATAAATCCTCATGCAAAAAACACCTTCGTTTCAATTAAt                                                                                                                              >  1:183410/1‑141 (MQ=255)
          ttCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAtt                                                                                                                             <  1:378951/141‑1 (MQ=255)
          ttCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAtt                                                                                                                             <  1:378762/141‑1 (MQ=255)
          ttCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAtt                                                                                                                             <  1:196841/141‑1 (MQ=255)
           tCACTGAAAATTTGTATAAAGATTTAAGTCATTTCGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTTATAAATCATCATACAAAAAACACCTTCGTTTAAATTCAttt                                                                                                                            <  1:56038/141‑1 (MQ=255)
             aCTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATGATCATACAAAAAACACCTTCGTTTAAATTCATTTTa                                                                                                                          >  2:347771/1‑141 (MQ=255)
             aCTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATAACATAAACACCATGTCTGTAATATCCCGCTTCATTGATTAACATTACGTATGTCGTCATAAATCTTCATACAAAAAACACCTCCGTTTAAGATCATTTTa                                                                                                                          >  2:109014/1‑141 (MQ=255)
              cTGAAAATTTGTATATAGATACAGAGCACTACGTAACGTTAACTCAAAAGTTTTGCTATACTATTCCGCTTCATTGATGAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTaa                                                                                                                         <  1:104485/141‑1 (MQ=255)
               tGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAAt                                                                                                                        >  1:392198/1‑141 (MQ=255)
                 aaaaTTTGTATAAAGCTTTAAGTCATTACGTAACACCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTg                                                                                                                      <  1:294825/141‑1 (MQ=255)
                        gTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTGATTTTAAATGCGAAtta                                                                                                               >  1:146077/1‑140 (MQ=255)
                        gTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTCCAATACTATTCCGCTACATCGATTAAAATTACATATGCCCACATAAATCATCATACAAAATACACCTTCGTTTAAATTCATTTTAATTGTGAATTc                                                                                                               >  2:40425/1‑141 (MQ=255)
                         tataAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCa                                                                                                              >  1:41341/1‑141 (MQ=255)
                           taAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAAc                                                                                                            <  2:22514/141‑1 (MQ=255)
                                     aGTCATTACGTACCATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCTTCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGTGAATTCAACGAAAGTGCCt                                                                                                  <  2:258037/141‑1 (MQ=255)
                                     aGTCATTACGTAACTTCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGCATGTCCTCATAAAAAAAAAAAAAAAAAACACtttcgttgaattcgcaattaaaatgaatttaaacgaaggtgttt                                                                                                  <  2:169191‑M1/141‑45 (MQ=255)
                                     aGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCt                                                                                                  >  2:248679/1‑141 (MQ=255)
                                           tACGAAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCAAATAAATGATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTc                                                                                            <  1:337673/141‑1 (MQ=255)
                                             cGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTGTTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTTTTTCat                                                                                          >  2:71067/1‑141 (MQ=255)
                                              gTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCata                                                                                         <  2:149959/141‑1 (MQ=255)
                                               tAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCatat                                                                                        >  2:274263/1‑141 (MQ=255)
                                                aaCATCTCATAATATTCATTTCTGTACTATTCCGCTTTATGGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATAtt                                                                                       <  2:89489/141‑1 (MQ=255)
                                                     cacaTATCATACATTTCTATACTATTCCGCTTCAATGATTACAATTACGTATGCCCTCATAAATCATCATACAAAAAACTCCTTCGTTTAAATTCATTTTAATTGCTAATTCAACGAAAGTGCCTTATTGCATATTTAATg                                                                                  <  2:310090/141‑1 (MQ=255)
                                                            aaTACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                           <  1:346984/141‑1 (MQ=255)
                                                            aaTACATTTCTATACTATTCCGCTTCATTGAGTAACATTACATGAATCAACGGGAGTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                           <  1:333781/141‑1 (MQ=255)
                                                              tACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAtt                                                                         <  1:392205/141‑1 (MQ=255)
                                                               aCATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAttt                                                                        <  2:169495/141‑1 (MQ=255)
                                                                 tattCTATCCTATTCCGCTTCATGGATTAACTTTTCGTATCCCCTCATAAATCATCATAAAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtat                                                                      <  2:35444/139‑1 (MQ=255)
                                                                  tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATGAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttgtttgtatgatgatttatgagggcatacgt                                                                     <  1:243070‑M2/141‑36 (MQ=255)
                                                                  tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACtttcgttgaattcgcaattaaaatgaatttaaccgaaggtgttttttgtatgatgatttataaggggatacgg                                                                     >  2:243070‑M1/1‑68 (MQ=255)
                                                                  tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtata                                                                     >  2:28918/1‑141 (MQ=255)
                                                                        aaatATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTg                                                               <  2:70291/138‑1 (MQ=255)
                                                                          cTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTc                                                             >  1:346346/1‑141 (MQ=255)
                                                                             ttCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACt                                                          <  2:70689/141‑1 (MQ=255)
                                                                               ccGCTTCATTGATTAATATTACGTATGCCCTCATAAAACAACAAACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGt                                                        <  2:3590/141‑1 (MQ=255)
                                                                                  cTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTAc                                                     >  1:257525/1‑141 (MQ=255)
                                                                                    tCATTGATTAACATTACGTGTGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAACGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTgtcactgtcactc                                                   >  2:237328/1‑140 (MQ=255)
                                                                                    tCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACtc                                                   >  1:80296/1‑140 (MQ=255)
                                                                                      aTTGATTAACATTACGTATTCCCTCATAAATCATCATACAAAAAACACCTTCGCTCAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTACATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGca                                                 <  2:252174/141‑1 (MQ=255)
                                                                                           ttAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACAt                                            >  1:169376/1‑141 (MQ=255)
                                                                                                 ttACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCa                                      >  1:214201/1‑141 (MQ=255)
                                                                                                   ccgTATCCCCTTATAAATCATCATACAAAAAACACCTTCGGTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttgtatgatgatttatgagggcatacgtaatgttaatcaatgaagcggaatagtatagaaa                                    >  2:243070‑M2/2‑73 (MQ=255)
                                                                                                   aCGTATGCCCTCATAAATCATCATACAAACAACACtttcgttgaattcgcaattaaaatgaatttaaacgaaggtgttttttgtatgatgattcatgagggcatacgtaatgttaatcaatgaagcggaatagtatagaaa                                    <  1:243070‑M1/141‑107 (MQ=255)
                                                                                                    cGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGCATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCGGTACCTGTTACTCCACACATACCTccgct                                   >  2:8701/1‑137 (MQ=255)
                                                                                                     gTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGtct                                  <  1:274263/141‑1 (MQ=255)
                                                                                                            cTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtca                           <  1:78672/141‑1 (MQ=255)
                                                                                                               aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCCCTCATGCCTCCGTCTCACCtcatcc                        >  1:36781/1‑140 (MQ=255)
                                                                                                               aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtcatca                        <  2:68205/141‑1 (MQ=255)
                                                                                                                  aaTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGACTTCTTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTCCTGCACACATACCTCAGTATCACCTCATCATGa                     >  2:172173/1‑141 (MQ=255)
                                                                                                                           aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa            >  2:219551/1‑141 (MQ=255)
                                                                                                                           aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa            <  2:59260/141‑1 (MQ=255)
                                                                                                                            cAAAAACCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat           <  1:147148/141‑1 (MQ=255)
                                                                                                                            cAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat           <  1:24382/141‑1 (MQ=255)
                                                                                                                                aaaCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttttttttttttttatgaggacatgcgtaatgttaatcaatgaagcggaatagtatagaaatgtattttatgtgaagttacgtaatgact       <  2:169191‑M2/141‑98 (MQ=255)
                                                                                                                                  acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa     <  1:206380/141‑1 (MQ=255)
                                                                                                                                  acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa     <  2:430124/141‑1 (MQ=255)
                                                                                                                                    acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaaaa   >  2:144271/1‑141 (MQ=255)
                                                                                                                                    acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTAACCTCATCATGACACAAAGGATATTGaaca   >  2:364879/1‑139 (MQ=255)
                                                                                                                                     ccTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAac  >  1:140683/1‑141 (MQ=255)
                                                                                                                                     |                                                                                                                                            
CATTGCGTGCTTCACTGAAAATTTGTATAAAGATTTAAGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAAC  >  CP000730/2854416‑2854689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.