New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 285454950 (1.260)3 (0.080) 3/254 NT 6.0% intergenic (+247/+166) USA300HOU_2696/rarD DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter
?CP000730 = 2854587 46 (1.190)intergenic (+285/+128) USA300HOU_2696/rarD DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter

AGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCGTATTTTATAGGGTTTTT  >  CP000730/2854453‑2854727
                                                                                                                                      |                                                                                                                                            
aGTCATTACGTACCATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCTTCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGTGAATTCAACGAAAGTGCCt                                                                                                                                        <  2:258037/141‑1 (MQ=255)
aGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCt                                                                                                                                        >  2:248679/1‑141 (MQ=255)
      tACGAAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCAAATAAATGATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTc                                                                                                                                  <  1:337673/141‑1 (MQ=255)
        cGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTGTTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTTTTTCat                                                                                                                                >  2:71067/1‑141 (MQ=255)
         gTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCata                                                                                                                               <  2:149959/141‑1 (MQ=255)
          tAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCatat                                                                                                                              >  2:274263/1‑141 (MQ=255)
           aaCATCTCATAATATTCATTTCTGTACTATTCCGCTTTATGGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATAtt                                                                                                                             <  2:89489/141‑1 (MQ=255)
                cacaTATCATACATTTCTATACTATTCCGCTTCAATGATTACAATTACGTATGCCCTCATAAATCATCATACAAAAAACTCCTTCGTTTAAATTCATTTTAATTGCTAATTCAACGAAAGTGCCTTATTGCATATTTAATg                                                                                                                        <  2:310090/141‑1 (MQ=255)
                       aaTACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                                                                 <  1:346984/141‑1 (MQ=255)
                       aaTACATTTCTATACTATTCCGCTTCATTGAGTAACATTACATGAATCAACGGGAGTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                                                                 <  1:333781/141‑1 (MQ=255)
                         tACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAtt                                                                                                               <  1:392205/141‑1 (MQ=255)
                          aCATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAttt                                                                                                              <  2:169495/141‑1 (MQ=255)
                            tattCTATCCTATTCCGCTTCATGGATTAACTTTTCGTATCCCCTCATAAATCATCATAAAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtat                                                                                                            <  2:35444/139‑1 (MQ=255)
                             tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATGAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttgtttgtatgatgatttatgagggcatacgt                                                                                                           <  1:243070‑M2/141‑36 (MQ=255)
                             tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtata                                                                                                           >  2:28918/1‑141 (MQ=255)
                                   aaatATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTg                                                                                                     <  2:70291/138‑1 (MQ=255)
                                     cTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTc                                                                                                   >  1:346346/1‑141 (MQ=255)
                                        ttCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACt                                                                                                <  2:70689/141‑1 (MQ=255)
                                          ccGCTTCATTGATTAATATTACGTATGCCCTCATAAAACAACAAACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGt                                                                                              <  2:3590/141‑1 (MQ=255)
                                             cTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTAc                                                                                           >  1:257525/1‑141 (MQ=255)
                                               tCATTGATTAACATTACGTGTGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAACGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTgtcactgtcactc                                                                                         >  2:237328/1‑140 (MQ=255)
                                               tCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACtc                                                                                         >  1:80296/1‑140 (MQ=255)
                                                 aTTGATTAACATTACGTATTCCCTCATAAATCATCATACAAAAAACACCTTCGCTCAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTACATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGca                                                                                       <  2:252174/141‑1 (MQ=255)
                                                      ttAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACAt                                                                                  >  1:169376/1‑141 (MQ=255)
                                                            ttACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCa                                                                            >  1:214201/1‑141 (MQ=255)
                                                              ccgTATCCCCTTATAAATCATCATACAAAAAACACCTTCGGTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttgtatgatgatttatgagggcatacgtaatgttaatcaatgaagcggaatagtatagaaa                                                                          >  2:243070‑M2/2‑73 (MQ=255)
                                                               cGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGCATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCGGTACCTGTTACTCCACACATACCTccgct                                                                         >  2:8701/1‑137 (MQ=255)
                                                                gTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGtct                                                                        <  1:274263/141‑1 (MQ=255)
                                                                       cTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtca                                                                 <  1:78672/141‑1 (MQ=255)
                                                                          aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCCCTCATGCCTCCGTCTCACCtcatcc                                                              >  1:36781/1‑140 (MQ=255)
                                                                          aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtcatca                                                              <  2:68205/141‑1 (MQ=255)
                                                                             aaTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGACTTCTTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTCCTGCACACATACCTCAGTATCACCTCATCATGa                                                           >  2:172173/1‑141 (MQ=255)
                                                                                      aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa                                                  >  2:219551/1‑141 (MQ=255)
                                                                                      aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa                                                  <  2:59260/141‑1 (MQ=255)
                                                                                       cAAAAACCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat                                                 <  1:147148/141‑1 (MQ=255)
                                                                                       cAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat                                                 <  1:24382/141‑1 (MQ=255)
                                                                                           aaaCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttttttttttttttatgaggacatgcgtaatgttaatcaatgaagcggaatagtatagaaatgtattttatgtgaagttacgtaatgact                                             <  2:169191‑M2/141‑98 (MQ=255)
                                                                                             acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa                                           <  1:206380/141‑1 (MQ=255)
                                                                                             acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa                                           <  2:430124/141‑1 (MQ=255)
                                                                                               acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaaaa                                         >  2:144271/1‑141 (MQ=255)
                                                                                               acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTAACCTCATCATGACACAAAGGATATTGaaca                                         >  2:364879/1‑139 (MQ=255)
                                                                                                ccTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAac                                        >  1:140683/1‑141 (MQ=255)
                                                                                                 cTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTTCACACATACCTCAGTCTCACCTACTCATGACACAAAGGATGTTGAAAaca                                       >  2:369937/1‑141 (MQ=255)
                                                                                                   tCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACg                                     <  1:459740/141‑1 (MQ=255)
                                                                                                   tCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACg                                     <  1:459679/141‑1 (MQ=255)
                                                                                                          aaTTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTCTAAtt                              >  1:150899/1‑141 (MQ=255)
                                                                                                               aTTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCTTTTTTAGTGGTTCAAATTTATACGTCTGTCACTGTTACTGCACACATTCCTCTGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCtt                         <  1:197922/141‑1 (MQ=255)
                                                                                                               aTTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAGGGATATTGAAAACACGTTTAATTCTCtt                         >  1:32454/1‑141 (MQ=255)
                                                                                                                     aTTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCg                   >  1:144372/1‑141 (MQ=255)
                                                                                                                       tGCGAATTCAACGAAAGTGCCTTATTTCAAATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCAGCATGACACAAAGGATATTGAAAACACGTATAATTATCTTGCCTCGTa                 <  1:95010/141‑1 (MQ=255)
                                                                                                                                 aCGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTCCCTTTCCTCGTATTTTATAggg       >  1:389025/1‑141 (MQ=255)
                                                                                                                                      aGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCGTATTTTATAGGGttttt  >  2:332478/1‑141 (MQ=255)
                                                                                                                                      |                                                                                                                                            
AGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCGTATTTTATAGGGTTTTT  >  CP000730/2854453‑2854727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.