New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 24599733 (0.860)3 (0.080) 3/278 4.0 8.5% intergenic (+324/‑59) USA300HOU_0219/USA300HOU_0220 M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
?CP000730 = 246015 33 (0.910)intergenic (+342/‑41) USA300HOU_0219/USA300HOU_0220 M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAACATTATTGTCACACTAGAAAATAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/245852‑245997
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgcaaTACACTTCGTGAAAACGTTTGCACAAATACTTACATAAATCATATATTCAGTCATTATTAATGTCAATCATAAATTATAAACGTTTACATTACTGTCAGAATTAAACTTTTATACAGAAAATTGATATAGTGCACAACTAT  <  CP000730/246015‑245875
                                                                                                                                                                                                                                                                                               
AAACATTATTGTCACACTAGAAAATAGTTGTCCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGCCAGTAATGTAAACGTTTATAATTTATGATTTACATTAATAATGACTGAATATATCATTTATGTAAGTATTTGTGCAATc                                                                                                                                             >  2:57502/1‑147
                                                                   GACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAATACACTTCGTGAAAACGTTTGCACAAAT                                                                                                                   >  1:257696/1‑107
                                                                   GACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAATACACTTCGTGAAAACGTTTGCACAAAT                                                                                                                   <  2:257696/107‑1
                                                                                                                                           TGTGCAATACACTTCGTGAAAACGTTTGCACAAATACTTACATAAATCATATATTCAGTCATTATTAATGTCAATCATAAATTATAAACGTTTACATTACTGTCAGAATTAAACTTTTATACAGAAAATTGATATAGTGCACAACTAT  >  1:325548/1‑148
                                                                                                                                           TGTGCAATACACTTCGTGAAAACGTTTGCACAAATACTTACATAAATCATATATTCAGTCATTATTAATGTCAATCATAAATTATAAACGTTTACATTACTGTCAGAATTAAACTTTTATACAGAAAATTGATATAGTGCACAACTAT  >  1:406358/1‑148
                                                                                                                                                                                                                                                                                               
AAACATTATTGTCACACTAGAAAATAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/245852‑245997
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgcaaTACACTTCGTGAAAACGTTTGCACAAATACTTACATAAATCATATATTCAGTCATTATTAATGTCAATCATAAATTATAAACGTTTACATTACTGTCAGAATTAAACTTTTATACAGAAAATTGATATAGTGCACAACTAT  <  CP000730/246015‑245875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.