New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 245997	33 (0.860)	3 (0.080)	3/278	4.0	8.5%	intergenic (+324/‑59)	USA300HOU_0219/USA300HOU_0220	M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
	?	CP000730	= 246015	33 (0.910)					intergenic (+342/‑41)	USA300HOU_0219/USA300HOU_0220	M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACAAAGAATTCATTGTATTTGT  >  CP000730/245875‑246162                                                                                                                                             |                                                                                                                                                    aTAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGcaca                                                                                                                                              <  1:406358/148‑1 (MQ=255) aTAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGcaca                                                                                                                                              <  1:325548/148‑1 (MQ=255)     ttGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAACCGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCa                                                                                                                                          <  1:311641/148‑1 (MQ=255)            cTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTa                                                                                                                                   >  1:106368/1‑148 (MQ=255)                        tCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATgg                                                                                                                       <  2:225009/148‑1 (MQ=255)                              taAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCa                                                                                                                 >  1:332791/1‑148 (MQ=255)                               aaaaGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCAt                                                                                                                <  1:60470/148‑1 (MQ=255)                                           cTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGaa                                                                                                    <  1:175016/148‑1 (MQ=255)                                              aaaGTCATGTAAACGTTTATAATTTATGATTGACATTACTAATGACTGCATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTa                                                                                                 <  2:262101/146‑1 (MQ=255)                                              aCAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTa                                                                                                 <  2:144221/148‑1 (MQ=255)                                                   aaTGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGtt                                                                                            <  1:113698/148‑1 (MQ=255)                                                    aTGTAAACGTTTATAATTTATGATTGACATTAATACTGACAGAATAAATGTATTCCGTCAGTATTTGTTCAAAGTTTTTCACAAAGTGTATTGCACAATCAATCTGTAAACAAAGTATGGGAGACATAACATGGCAGAACTAAAGTTa                                                                                           <  1:122376/148‑1 (MQ=255)                                                    aTGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTa                                                                                           >  2:330856/1‑148 (MQ=255)                                                    aTGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTGATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTa                                                                                           <  2:243916/148‑1 (MQ=255)                                                     tGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTag                                                                                          <  1:157898/148‑1 (MQ=255)                                                         aaCGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCa                                                                                      <  1:134775/148‑1 (MQ=255)                                                         aaCGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCa                                                                                      <  1:379970/148‑1 (MQ=255)                                                               tataATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTaa                                                                                <  1:172255/148‑1 (MQ=255)                                                                     ttATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGAc                                                                          <  2:46699/148‑1 (MQ=255)                                                                     ttATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGAc                                                                          <  2:16054/148‑1 (MQ=255)                                                                          aTTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATg                                                                     >  2:139156/1‑148 (MQ=255)                                                                            tGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGAt                                                                   >  2:217433/1‑148 (MQ=255)                                                                                aTTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATaaca                                                               >  2:326953/1‑148 (MQ=255)                                                                                         gACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTg                                                      >  2:137920/1‑148 (MQ=255)                                                                                           cTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTa                                                    <  1:188547/148‑1 (MQ=255)                                                                                             gAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGt                                                  >  1:163793/1‑148 (MQ=255)                                                                                             gAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGt                                                  >  2:218623/1‑148 (MQ=255)                                                                                                tatatGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGaa                                               >  2:414328/1‑148 (MQ=255)                                                                                                tatatGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGaa                                               >  1:87532/1‑148 (MQ=255)                                                                                                            gTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCt                                   <  2:78146/148‑1 (MQ=255)                                                                                                                        gCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGa                       <  2:38129/148‑1 (MQ=255)                                                                                                                        gCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGa                       <  2:38132/148‑1 (MQ=255)                                                                                                                          aaaCGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACa                     >  1:153223/1‑148 (MQ=255)                                                                                                                                          tgtATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACAAAGAATTCATTGTAtt     <  1:326953/148‑1 (MQ=255)                                                                                                                                             aTTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACAAAGAATTCATTGTATttgt  <  1:217433/148‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    ATAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACAAAGAATTCATTGTATTTGT  >  CP000730/245875‑246162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.