New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 245997	33 (0.860)	3 (0.080)	3/278	4.0	8.5%	intergenic (+324/‑59)	USA300HOU_0219/USA300HOU_0220	M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
	?	CP000730	= 246015	33 (0.910)					intergenic (+342/‑41)	USA300HOU_0219/USA300HOU_0220	M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAACATTATTGTCACACTAGAAAATAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACA  >  CP000730/245852‑246143                                                                                                                                                  |                                                                                                                                                   aaaCATTATTGTCACACTAGAAAATAGTTGTCCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGCCAGTAATGTAAACGTTTATAATTTATGATTTACATTAATAATGACTGAATATATCATTTATGTAAGTATTTGTGCaatc                                                                                                                                                  >  2:57502/1‑146 (MQ=255)                        aTAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGcaca                                                                                                                           <  1:406358/148‑1 (MQ=255)                        aTAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGcaca                                                                                                                           <  1:325548/148‑1 (MQ=255)                            ttGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAACCGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCa                                                                                                                       <  1:311641/148‑1 (MQ=255)                                   cTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTa                                                                                                                >  1:106368/1‑148 (MQ=255)                                               tCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATgg                                                                                                    <  2:225009/148‑1 (MQ=255)                                                     taAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCa                                                                                              >  1:332791/1‑148 (MQ=255)                                                      aaaaGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCAt                                                                                             <  1:60470/148‑1 (MQ=255)                                                                  cTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGaa                                                                                 <  1:175016/148‑1 (MQ=255)                                                                     aaaGTCATGTAAACGTTTATAATTTATGATTGACATTACTAATGACTGCATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTa                                                                              <  2:262101/146‑1 (MQ=255)                                                                     aCAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTa                                                                              <  2:144221/148‑1 (MQ=255)                                                                          aaTGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGtt                                                                         <  1:113698/148‑1 (MQ=255)                                                                           aTGTAAACGTTTATAATTTATGATTGACATTAATACTGACAGAATAAATGTATTCCGTCAGTATTTGTTCAAAGTTTTTCACAAAGTGTATTGCACAATCAATCTGTAAACAAAGTATGGGAGACATAACATGGCAGAACTAAAGTTa                                                                        <  1:122376/148‑1 (MQ=255)                                                                           aTGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTa                                                                        >  2:330856/1‑148 (MQ=255)                                                                           aTGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTGATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTa                                                                        <  2:243916/148‑1 (MQ=255)                                                                            tGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTag                                                                       <  1:157898/148‑1 (MQ=255)                                                                                aaCGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCa                                                                   <  1:379970/148‑1 (MQ=255)                                                                                aaCGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCa                                                                   <  1:134775/148‑1 (MQ=255)                                                                                      tataATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTaa                                                             <  1:172255/148‑1 (MQ=255)                                                                                            ttATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGAc                                                       <  2:46699/148‑1 (MQ=255)                                                                                            ttATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGAc                                                       <  2:16054/148‑1 (MQ=255)                                                                                                 aTTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATg                                                  >  2:139156/1‑148 (MQ=255)                                                                                                   tGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGAt                                                >  2:217433/1‑148 (MQ=255)                                                                                                       aTTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATaaca                                            >  2:326953/1‑148 (MQ=255)                                                                                                                gACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTg                                   >  2:137920/1‑148 (MQ=255)                                                                                                                  cTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTa                                 <  1:188547/148‑1 (MQ=255)                                                                                                                    gAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGt                               >  2:218623/1‑148 (MQ=255)                                                                                                                    gAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGt                               >  1:163793/1‑148 (MQ=255)                                                                                                                       tatatGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGaa                            >  1:87532/1‑148 (MQ=255)                                                                                                                       tatatGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGaa                            >  2:414328/1‑148 (MQ=255)                                                                                                                                   gTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCt                <  2:78146/148‑1 (MQ=255)                                                                                                                                               gCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGa    <  2:38129/148‑1 (MQ=255)                                                                                                                                               gCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGa    <  2:38132/148‑1 (MQ=255)                                                                                                                                                 aaaCGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACa  >  1:153223/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                   AAACATTATTGTCACACTAGAAAATAGTTGTGCACTATATCAATTTTCTGTATAAAAGTTTAATTCTGACAGTAATGTAAACGTTTATAATTTATGATTGACATTAATAATGACTGAATATATGATTTATGTAAGTATTTGTGCAAACGTTTTCACGAAGTGTATTGCACAATCAAACTGTAAACAAAGTATGGGAGGCATAACATGGCAGAACTAAAGTTAGAGCATATTAAAAAGACGTATGATAACAACAATACTGTAGTGAAAGATTTTAATCTACATATTACTGACA  >  CP000730/245852‑246143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.