New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2182185	33 (1.210)	3 (0.120)	3/244	3.9	9.1%	intergenic (‑474/+173)	USA300HOU_t0054/sprL	tRNA‑Leu/hypothetical protein
	?	CP000730	= 2182203	30 (1.220)					intergenic (‑492/+155)	USA300HOU_t0054/sprL	tRNA‑Leu/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGCTACTTTAAAGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2182038‑2182185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccgagattgTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATGATATAGGTAATGGCATAAATTGTGGCTTGATAGGATGAAATTAAAATGATTAGATTAAAAATCTTGGCGTATTTTAGTAATAATTAATATATAAACTT  <  CP000730/2182203‑2182065                                                                                                                                                                                                                                                                                                 GTGCTACTTTAAAGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCC                                                                                                                                                    >  1:105306/1‑141   GCTACTTTAAAGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGA                                                                                                                                                  <  1:55883/141‑1                          TAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGTCGTAATTTAATACTTCG                                                                                                                           <  2:223513/141‑1                                                             AAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATG                                                                                                    <  2:30587/129‑1                                                             AAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATG                                                                                                    >  1:30587/1‑129                                                                                                                                         AAGCCGAGATTGTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATGATATAGGTAATGGCATAAATTGTGGCTTGATAGGATGAAATTAAAATGATTAGATTAAAAATCTTGGCGTATTTTAGTAATAATTAAT            >  2:183430/1‑141                                                                                                                                                   TGTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATGATATAGGTAATGGCATAAATTGTGGCTTGATAGGATGAAATTAAAATGATTAGATTAAAAATCTTGGCGTATTTTAGTAATAATTAATATATAAACTT  >  1:35571/1‑141                                                                                                                                                   TGTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATGATATAGGTAATGGCATAAATTGTGGCTTGATAGGATGAAATTAAAATGATTAGATTAAAAATCTTGGCGTATTTTAGTAATAATTAATATATAAACTT  >  1:302935/1‑141                                                                                                                                                   TGTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATGATATAGGTAATGGCATAAATTGTGGCTTGATAGGATGAAATTAAAATGATTAGATTAAAAATCTTGGCGTATTTTAGTAATAATTAATATATAAACTT  >  1:35582/1‑141                                                                                                                                                                                                                                                                                                 GTGCTACTTTAAAGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2182038‑2182185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccgagattgTCGTAATTTAATACTTCGCAATCTCGGCTTTTCTACTTATGATATAGGTAATGGCATAAATTGTGGCTTGATAGGATGAAATTAAAATGATTAGATTAAAAATCTTGGCGTATTTTAGTAATAATTAATATATAAACTT  <  CP000730/2182203‑2182065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.