New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2182185	33 (1.210)	3 (0.120)	3/244	3.9	9.1%	intergenic (‑474/+173)	USA300HOU_t0054/sprL	tRNA‑Leu/hypothetical protein
	?	CP000730	= 2182203	30 (1.220)					intergenic (‑492/+155)	USA300HOU_t0054/sprL	tRNA‑Leu/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCTTACATATACACGAATTAGC  >  CP000730/2182065‑2182341                                                                                                                                           |                                                                                                                                           aaGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACa                                                                                                                                          <  1:35582/141‑1 (MQ=255) aaGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACa                                                                                                                                          <  1:35571/141‑1 (MQ=255) aaGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACa                                                                                                                                          <  1:302935/141‑1 (MQ=255)           attaattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCtt                                                                                                                                <  2:183430/141‑1 (MQ=255)              aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                                             <  2:169561/141‑1 (MQ=255)              aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                                             <  2:184959/141‑1 (MQ=255)              aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                                             <  2:169397/141‑1 (MQ=255)              aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                                             <  1:305826/141‑1 (MQ=255)                 tattaCTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACa                                                                                                                          <  2:258901/141‑1 (MQ=255)                     aCTAAAATACGCCAAGATTTTTAATCTAAGCATTTTAATTTCATCCAAACAAGCCACAATTAATTCCATTACCGATATCATAAGTAAAAAAGCAGAGATTTCAAAGTATAAAATAACGACAATCTCGACTTTAAACAattt                                                                                                                      >  2:67195/1‑141 (MQ=255)                         aaaTACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATaa                                                                                                                  >  2:204465/1‑141 (MQ=255)                                         ttAATCTAATCTTTTTAAATTCATCCTATCAAGCCACACTTTATGCCATTACTTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTAGTAAATTACGACAATCTCGGCGTTAATCATTGCATAAACACAAGTTCTTCTTa                                                                                                  <  2:288054/141‑1 (MQ=255)                                                        tAATTTCATCCTATCAAGCCACAATTTATGCCATTAACTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAAAACAAATTCTTCTTATTCAATTACTAtttt                                                                                   >  2:191146/1‑141 (MQ=255)                                                          aTTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTa                                                                                 >  2:145043/1‑141 (MQ=255)                                                          aTTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTa                                                                                 >  2:58594/1‑141 (MQ=255)                                                             tCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCa                                                                              >  1:227494/1‑141 (MQ=255)                                                                   tATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCaaa                                                                        <  2:112220/141‑1 (MQ=255)                                                                   tATCAAACCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAAGCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCaaa                                                                        <  2:170125/141‑1 (MQ=255)                                                                    aTCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCaaaa                                                                       <  1:156283/141‑1 (MQ=255)                                                                             cagtttATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAAGTACGACACTCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCACTTACTATGTTTACCAATCAAAATAACTCACt                                                              <  2:83385/138‑1 (MQ=255)                                                                               aTTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGa                                                            <  2:157551/141‑1 (MQ=255)                                                                                          tACCTATATCATAAGTAGAAAAGCCGAGATTGCTAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCTCTTATAAATTCtata                                                 <  2:105306/141‑1 (MQ=255)                                                                                                tatCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATGACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAAtt                                           <  2:227494/141‑1 (MQ=255)                                                                                                      aaGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATAc                                     >  2:246093/1‑141 (MQ=255)                                                                                                       aGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACa                                    <  1:145043/141‑1 (MQ=255)                                                                                                           gAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTc                                >  1:142732/1‑141 (MQ=255)                                                                                                           gAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTc                                >  1:153569/1‑141 (MQ=255)                                                                                                            aaaaGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCa                               >  2:32866/1‑141 (MQ=255)                                                                                                               aGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTAATATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCataa                            <  2:242280/141‑1 (MQ=255)                                                                                                                      aTTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCt                     >  2:58146/1‑141 (MQ=255)                                                                                                                                    aaTTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCTTACATATACACGaa       >  2:92572/1‑141 (MQ=255)                                                                                                                                    aaTTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCTTACATATACACGaa       <  1:283331/141‑1 (MQ=255)                                                                                                                                       tACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCTTACATATACACGAATTa    <  2:216735/141‑1 (MQ=255)                                                                                                                                         cGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCTTACATATACACGAATTAGc  >  1:235513/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                           AAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCTTACATATACACGAATTAGC  >  CP000730/2182065‑2182341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.