New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2182185	33 (1.210)	3 (0.120)	3/244	3.9	9.1%	intergenic (‑474/+173)	USA300HOU_t0054/sprL	tRNA‑Leu/hypothetical protein
	?	CP000730	= 2182203	30 (1.220)					intergenic (‑492/+155)	USA300HOU_t0054/sprL	tRNA‑Leu/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCT  >  CP000730/2182050‑2182322                                                                                                                                        |                                                                                                                                          aGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAg                                                                                                                                      <  2:300791/141‑1 (MQ=255)  gCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGt                                                                                                                                     >  1:184959/1‑141 (MQ=255)     ttAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTAtt                                                                                                                                  >  1:32525/1‑141 (MQ=255)                aaGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACa                                                                                                                       <  1:35571/141‑1 (MQ=255)                aaGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACa                                                                                                                       <  1:35582/141‑1 (MQ=255)                aaGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACa                                                                                                                       <  1:302935/141‑1 (MQ=255)                          attaattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCtt                                                                                                             <  2:183430/141‑1 (MQ=255)                             aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                          <  1:305826/141‑1 (MQ=255)                             aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                          <  2:169397/141‑1 (MQ=255)                             aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                          <  2:184959/141‑1 (MQ=255)                             aattaTTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTaa                                                                                                          <  2:169561/141‑1 (MQ=255)                                tattaCTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACa                                                                                                       <  2:258901/141‑1 (MQ=255)                                    aCTAAAATACGCCAAGATTTTTAATCTAAGCATTTTAATTTCATCCAAACAAGCCACAATTAATTCCATTACCGATATCATAAGTAAAAAAGCAGAGATTTCAAAGTATAAAATAACGACAATCTCGACTTTAAACAattt                                                                                                   >  2:67195/1‑141 (MQ=255)                                        aaaTACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATaa                                                                                               >  2:204465/1‑141 (MQ=255)                                                        ttAATCTAATCTTTTTAAATTCATCCTATCAAGCCACACTTTATGCCATTACTTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTAGTAAATTACGACAATCTCGGCGTTAATCATTGCATAAACACAAGTTCTTCTTa                                                                               <  2:288054/141‑1 (MQ=255)                                                                       tAATTTCATCCTATCAAGCCACAATTTATGCCATTAACTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAAAACAAATTCTTCTTATTCAATTACTAtttt                                                                >  2:191146/1‑141 (MQ=255)                                                                         aTTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTa                                                              >  2:58594/1‑141 (MQ=255)                                                                         aTTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTa                                                              >  2:145043/1‑141 (MQ=255)                                                                            tCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCa                                                           >  1:227494/1‑141 (MQ=255)                                                                                  tATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCaaa                                                     <  2:112220/141‑1 (MQ=255)                                                                                  tATCAAACCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAAGCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCaaa                                                     <  2:170125/141‑1 (MQ=255)                                                                                   aTCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCaaaa                                                    <  1:156283/141‑1 (MQ=255)                                                                                            cagtttATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAAGTACGACACTCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCACTTACTATGTTTACCAATCAAAATAACTCACt                                           <  2:83385/138‑1 (MQ=255)                                                                                              aTTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGa                                         <  2:157551/141‑1 (MQ=255)                                                                                                         tACCTATATCATAAGTAGAAAAGCCGAGATTGCTAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCTCTTATAAATTCtata                              <  2:105306/141‑1 (MQ=255)                                                                                                               tatCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATGACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAAtt                        <  2:227494/141‑1 (MQ=255)                                                                                                                     aaGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATAc                  >  2:246093/1‑141 (MQ=255)                                                                                                                      aGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACa                 <  1:145043/141‑1 (MQ=255)                                                                                                                          gAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTc             >  1:142732/1‑141 (MQ=255)                                                                                                                          gAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTc             >  1:153569/1‑141 (MQ=255)                                                                                                                           aaaaGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCa            >  2:32866/1‑141 (MQ=255)                                                                                                                              aGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTAATATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCataa         <  2:242280/141‑1 (MQ=255)                                                                                                                                     aTTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCt  >  2:58146/1‑141 (MQ=255)                                                                                                                                        |                                                                                                                                          AGCTTTAATTGGGTAAAGTTTATATATTAATTATTACTAAAATACGCCAAGATTTTTAATCTAATCATTTTAATTTCATCCTATCAAGCCACAATTTATGCCATTACCTATATCATAAGTAGAAAAGCCGAGATTGCGAAGTATTAAATTACGACAATCTCGGCTTTAAACATTTTATAAACACAATTTCTTCTTATTCAATTACTATGTTTACCAATCAAAATAACTCACTGATAAATTCTATATAAATTCCATACAACTCATAAATAATCT  >  CP000730/2182050‑2182322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.