New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2492466 =	28 (1.020)	3 (0.120)	3/248	3.9	11.0%	intergenic (+9/+37)	yhfP/USA300HOU_2354	possible zinc (Zn2+) dependent dehydrogenase/possible acetyltransferase
	?	CP000730	2492499 =	23 (0.920)					intergenic (+42/+4)	yhfP/USA300HOU_2354	possible zinc (Zn2+) dependent dehydrogenase/possible acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCCTGAAAATTTACATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAAT  >  CP000730/2492332‑2492592                                                                                                                                       |                                                                                                                               aTGCCTGAAAATTTACATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGAGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGa                                                                                                                          >  1:304790/1‑141 (MQ=255)    ccTGAAAATTTACATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACAt                                                                                                                       >  1:199703/1‑141 (MQ=255)          aaTTTACATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGtt                                                                                                                 >  2:32575/1‑141 (MQ=255)          aaTTTACATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAAAAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGtt                                                                                                                 <  2:152990/141‑1 (MQ=255)               aCATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCg                                                                                                            <  1:37011/141‑1 (MQ=255)                     gaTCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGt                                                                                                      <  2:199703/141‑1 (MQ=255)                     aaTCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGt                                                                                                      <  2:174860/140‑1 (MQ=255)                      aTCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTc                                                                                                     <  1:284383/141‑1 (MQ=255)                          agcaagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttt                                                                                                 >  1:158134/1‑141 (MQ=255)                            caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                               >  2:101472/1‑141 (MQ=255)                            caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                               >  1:139100/1‑141 (MQ=255)                              agTTATTACATTTAATGAACTTCCAGAACAACATAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAAATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGAAGTCTATTTTaa                                                                                             >  2:1452/1‑141 (MQ=255)                                   ttaCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAATGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAg                                                                                        <  1:73206/141‑1 (MQ=255)                                              gaACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                                             >  2:275084/1‑141 (MQ=255)                                                aCTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATataca                                                                           >  2:5604/1‑141 (MQ=255)                                                               tAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                                                            >  1:139945/1‑141 (MQ=255)                                                                             aaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGtata                                              >  1:152544/1‑141 (MQ=255)                                                                                 tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                          >  1:36213/1‑141 (MQ=255)                                                                                  gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                         <  1:80886/141‑1 (MQ=255)                                                                                  gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                         <  1:262681/141‑1 (MQ=255)                                                                                        aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                   <  2:92190/141‑1 (MQ=255)                                                                                                       aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATc                    >  1:95263/1‑141 (MQ=255)                                                                                                         cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                          <  1:147607/117‑1 (MQ=255)                                                                                                         cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                          >  2:147607/1‑117 (MQ=255)                                                                                                         cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCg                  <  2:278600/141‑1 (MQ=255)                                                                                                           aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCt                <  2:79391/141‑1 (MQ=255)                                                                                                              tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTggg             >  2:230234/1‑141 (MQ=255)                                                                                                                         aaaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAAt  <  2:102014/141‑1 (MQ=255)                                                                                                                                       |                                                                                                                               ATGCCTGAAAATTTACATGAGATCAAGCAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAAT  >  CP000730/2492332‑2492592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.