New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2492466 =	28 (1.020)	3 (0.120)	3/248	3.9	11.0%	intergenic (+9/+37)	yhfP/USA300HOU_2354	possible zinc (Zn2+) dependent dehydrogenase/possible acetyltransferase
	?	CP000730	2492499 =	23 (0.920)					intergenic (+42/+4)	yhfP/USA300HOU_2354	possible zinc (Zn2+) dependent dehydrogenase/possible acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAA  >  CP000730/2492359‑2492630                                                                                                                                             |                                                                                                                                    caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                                                                     >  1:139100/1‑141 (MQ=255) caagTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                                                                                                     >  2:101472/1‑141 (MQ=255)   agTTATTACATTTAATGAACTTCCAGAACAACATAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAAATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGAAGTCTATTTTaa                                                                                                                                   >  2:1452/1‑141 (MQ=255)        ttaCATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAATGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAg                                                                                                                              <  1:73206/141‑1 (MQ=255)                   gaACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAtata                                                                                                                   >  2:275084/1‑141 (MQ=255)                     aCTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATataca                                                                                                                 >  2:5604/1‑141 (MQ=255)                                    tAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                                                                                                  >  1:139945/1‑141 (MQ=255)                                                  aaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGtata                                                                                    >  1:152544/1‑141 (MQ=255)                                                      tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                                                                >  1:36213/1‑141 (MQ=255)                                                       gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                                                               <  1:262681/141‑1 (MQ=255)                                                       gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATcc                                                                               <  1:80886/141‑1 (MQ=255)                                                             aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAttt                                                                         <  2:92190/141‑1 (MQ=255)                                                                            aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATc                                                          >  1:95263/1‑141 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                                                                <  1:147607/117‑1 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc                                                                                >  2:147607/1‑117 (MQ=255)                                                                              cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCg                                                        <  2:278600/141‑1 (MQ=255)                                                                                aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCt                                                      <  2:79391/141‑1 (MQ=255)                                                                                   tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTggg                                                   >  2:230234/1‑141 (MQ=255)                                                                                              aaaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAAt                                        <  2:102014/141‑1 (MQ=255)                                                                                                                aGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTAct                      <  2:152544/141‑1 (MQ=255)                                                                                                                  aCATCCCGTTATGCGCGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGGTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTActct                    >  1:159704/1‑141 (MQ=255)                                                                                                                     tCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCaa                 <  1:294888/141‑1 (MQ=255)                                                                                                                     tCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCaa                 <  2:304790/141‑1 (MQ=255)                                                                                                                        cgcataacgggaTGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAg              >  2:184560/11‑141 (MQ=255)                                                                                                                                  gaTGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCttt    >  2:265444/1‑141 (MQ=255)                                                                                                                                    tGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTaa  <  1:148113/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                    CAAGTTATTACATTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGCAATCAGACTAACGTATGTACTCTCAACAGCCACACCTTTAA  >  CP000730/2492359‑2492630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.