New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	830841 =	24 (0.880)	3 (0.120)	3/246	3.9	11.6%	intergenic (+10/‑404)	raiA/secA1	possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA
	?	CP000730	830871 =	24 (0.960)					intergenic (+40/‑374)	raiA/secA1	possible ribosome‑associated inhibitor protein Y/Sec family Type I general secretory pathway preprotein translocase subunit SecA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTCTTTGTATTCACAGACAGAGAAACTGATGGAACAAGTATCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTTAATAATAGTATGTCAGTCTATT  >  CP000730/830735‑831005                                                                                                                                         |                                                                                                                                       cttcttTGTATTCACAGACAGAGAAACTGATGGAACAAGTATCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTtat                                                                                                                                    <  1:93561/141‑1 (MQ=255)      ttGTATTCACAGACAGAGAAACTGATGGAACACGTATCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTcc                                                                                                                               >  2:224245/1‑141 (MQ=255)                              aTGGAACAAGTATCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCAt                                                                                                       >  2:85239/1‑141 (MQ=255)                               tGGAACAAGTATCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATa                                                                                                      >  2:64878/1‑141 (MQ=255)                                         aTCGTTTACCGCCGTGAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCAAAAAGCAAATTATGACTATTTCATAGTTCGATAAt                                                                                            >  2:22411/1‑141 (MQ=255)                                          tCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATg                                                                                           >  1:106405/1‑141 (MQ=255)                                              ttACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAAt                                                                                       <  1:161391/141‑1 (MQ=255)                                                aCCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAAttt                                                                                     <  1:6286/141‑1 (MQ=255)                                                          aGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTtgaatgaa                                                                           >  1:236031/1‑141 (MQ=255)                                                           gACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGaaa                                                                          >  2:128659/1‑141 (MQ=255)                                                            aCGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAAc                                                                         <  2:49494/141‑1 (MQ=255)                                                               gTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATa                                                                      >  1:198441/1‑141 (MQ=255)                                                                       ggCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTAt                                                              >  1:264579/1‑141 (MQ=255)                                                                               tCAAACTAGTGAACAATAAACTAAATTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTTAATGAAACATAGTGACTATGCTAATGt                                                      >  2:136758/1‑141 (MQ=255)                                                                                      aGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGa                                               >  1:8554/1‑141 (MQ=255)                                                                                           aCAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGtat                                          >  2:222645/1‑141 (MQ=255)                                                                                            cAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGtata                                         >  1:92934/1‑141 (MQ=255)                                                                                               tAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTatatat                                      >  1:296538/1‑141 (MQ=255)                                                                                                   ttAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGa                                  <  2:264579/141‑1 (MQ=255)                                                                                                            aaGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATgttaagt                         >  1:288873/1‑141 (MQ=255)                                                                                                                 cTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTtaata                    >  1:95127/1‑141 (MQ=255)                                                                                                                  ttGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTtattaa                   >  2:3/1‑141 (MQ=255)                                                                                                                     tgcaaaaacacaAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTTAATAATAg                >  2:2119/9‑141 (MQ=255)                                                                                                                        ttttGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTTAATAATAGTAt             >  2:190638/1‑141 (MQ=255)                                                                                                                         tttGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTTAATAATAGTATg            >  1:277700/1‑141 (MQ=255)                                                                                                                                   tGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTTAATAATAGTATGTCAGTCTAtt  <  1:224245/141‑1 (MQ=255)                                                                                                                                         |                                                                                                                                       CTTCTTTGTATTCACAGACAGAGAAACTGATGGAACAAGTATCGTTTACCGCCGTAAAGACGGTAAATATGGCTTGATTCAAACTAGTGAACAATAAATTAAGTTTAAAGCACTTGTGTTTTTGCACAAGTGCTTTTTTATACTCCAAAAGCAAATTATGACTATTTCATAGTTCGATAATGTAATTTGTTGAATGAAACATAGTGACTATGCTAATGTTAATGGATGTATATATTTGAATGTTAAGTTAATAATAGTATGTCAGTCTATT  >  CP000730/830735‑831005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.