New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	769469 =	61 (0.960)	3 (0.050)	3/258	10.7	4.6%	intergenic (+56/‑237)	norA/USA300HOU_0719	MFS family major facilitator transporter/hypothetical protein
	?	CP000730	769512 =	66 (1.100)					intergenic (+99/‑194)	norA/USA300HOU_0719	MFS family major facilitator transporter/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTTGTAACATGTTTATTACTCAAAATCATTTTTTGTTACATATAACATTTAAATATAAAGAGTAAAACATTTAGTCAATCGAATCTTTTTAAATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/769611‑769469 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgctTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAATATTACATTCTTTTTAAATTGCAATCCACATACCTAATTCAT  >  CP000730/769512‑769651                                                                                                                                                                                                                                                                                             TATTTGTAACATGTTTATTACTCAAAATCATTTTTTGTTACATATAACATTTAAATATAAAGAGTAAAACATTTAGTCAATCGAATCTTTTTAAATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATG                                                                                                                                                <  2:530894/141‑1  ATTTGTAACATGTTTATTACTCAAAATCATTTTTTGTTACATATAACATTTAAATATAAAGAGTAAAACATTTAGTCAATCGAATCTTTTTAAATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATGC                                                                                                                                               <  1:28072/141‑1                                                                GTAAAACATTTAGTCAATCGAATCTTTTTAAATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGAT                                                                                                                                                 >  1:330996/1‑77                                                                GTAAAACATTTAGTCAATCGAATCTTTTTAAATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGAT                                                                                                                                                 <  2:330996/77‑1                                                                                               ATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATGCTTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGT                                                  >  2:48587/1‑141                                                                                                 GTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATGCTTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTA                                                >  1:232204/1‑141                                                                                                      GCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATGCTTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAAT                                           >  1:639866/1‑141                                                                                                                                          GATGCTTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAATATTACATTCTTTTTAAATTGCAATCCACATACCTAA       >  1:86513/1‑141                                                                                                                                           ATGCTTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAATATTACATTCTTTTTAAATTGCAATCCACATACCTAAT      >  2:132498/1‑141                                                                                                                                              CTTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAATATTACATTCTTTTTAAATTGCAATCCACATACCTAATTCA   >  2:538394/1‑141                                                                                                                                               TTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAATATTACATTCTTTTTAAATTGCAATCCACATACCTAATTCAT  <  2:618844/141‑1                                                                                                                                                                                                                                                                                             TATTTGTAACATGTTTATTACTCAAAATCATTTTTTGTTACATATAACATTTAAATATAAAGAGTAAAACATTTAGTCAATCGAATCTTTTTAAATGTAAAGCATCGAATTTTCTTAATAAAATTCATAAGAAAAACGATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/769611‑769469 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgctTTACATTTAAAAAGATTCGATTGACTAAATGTTTTACTCTTTATATTTAAATGTTATATGTAACAAAAAATGATTTTGAGTAATAAACATGTTACAAATATTACATTCTTTTTAAATTGCAATCCACATACCTAATTCAT  >  CP000730/769512‑769651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.