New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	34173 =	72 (1.140)	5 (0.080)	5/246	NT	7.0%	coding (462/480 nt)	orfX	hypothetical protein OrfX
	?	CP000730	= 57858	64 (1.070)					intergenic (+304/+613)	USA300HOU_0048/USA300HOU_0049	hypothetical membrane protein/hypothetical protein

CTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/34317‑34173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttctGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATAC  <  CP000730/57858‑57723                                                                                                                                                                                                                                                                                           ctagtgCAAAAATCATGAACCTCATTACTTATGATAATCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTTAAAAAACCGCATCATTTATGATATG                                                                                                                                               <  2:106409/134‑1    TGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTT                                                                                                                                            <  1:127813/140‑1                             TTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTT                                                                                                                   <  1:591125/140‑1                                              AAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACA                                                                                                  <  2:349213/140‑1                                                                                        CATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATA                                                        <  1:655393/140‑1                                                                                                          GAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGC                                      <  2:687028/140‑1                                                                                                             GCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATTCGGTATATTAAAAAAAAATACAGAAATTTATAAAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAAAAGCTTA                                   >  1:1514/1‑140                                                                                                                                              TTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATAC  <  2:108854/140‑1                                                                                                                                                                                                                                                                                           CTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/34317‑34173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttctGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATAC  <  CP000730/57858‑57723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.