New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	34173 =	72 (1.140)	5 (0.080)	5/246	NT	7.0%	coding (462/480 nt)	orfX	hypothetical protein OrfX
	?	CP000730	= 57858	64 (1.070)					intergenic (+304/+613)	USA300HOU_0048/USA300HOU_0049	hypothetical membrane protein/hypothetical protein

GTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTT  >  CP000730/57723‑57996                                                                                                                                         |                                                                                                                                           gTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaa                                                                                                                                        <  2:108854‑M2/140‑5 (MQ=255)              cAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAAt                                                                                                                           <  2:655053/140‑1 (MQ=255)                 aagaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATaaa                                                                                                                        >  1:555959/1‑140 (MQ=255)                 aagaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATaaa                                                                                                                        >  2:655212/1‑140 (MQ=255)                      gtgtCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACaaa                                                                                                                   >  1:608135/1‑140 (MQ=255)                      gtgtCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaa                                                                                                                   >  2:605489/1‑140 (MQ=255)                       tgtCTATTGTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaa                                                                                                                  <  2:707470/140‑1 (MQ=255)                            aCTTTGTAAGCTTCTAATAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATa                                                                                                             <  1:683090/140‑1 (MQ=255)                             cTTTGTAAGCTTCTAATAACTTAGTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTTATAAGCAGATGCGTATCACAAATAAAACTAAAAAATAg                                                                                                            <  2:155224/140‑1 (MQ=255)                               ttGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGAt                                                                                                          <  1:553926/140‑1 (MQ=255)                                  tAAGCTTTTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTTTATAAATTTCTGTA‑TTTTTTTTTAATATACCGAATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgc                                                                                                       >  1:1514‑M2/1‑103 (MQ=255)                                     gCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttc                                                                                                    <  2:687028‑M2/140‑41 (MQ=255)                                          tAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataata                                                                                               >  2:98243/1‑140 (MQ=255)                                          tAACAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataata                                                                                               <  2:324972/140‑1 (MQ=255)                                            aaaaattattaTATGATATAGCGTTTGAGGTTTTTTGTTCTTATATAAATTTCTGAA‑GTTATTTTTCAAAAACCGCATCATTAACGGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataatata                                                                                             <  2:110735/135‑1 (MQ=255)                                             gAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataatataa                                                                                            <  1:511546/140‑1 (MQ=255)                                             gAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataatataa                                                                                            <  1:723417/140‑1 (MQ=255)                                              aaCTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATaaa                                                                                           <  1:475457/140‑1 (MQ=255)                                                 ttattaTATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACTGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAaagg                                                                                        <  1:285817/140‑1 (MQ=255)                                                 ttattaTATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAaagg                                                                                        <  2:78750/140‑1 (MQ=255)                                                 ttattaTATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAaagg                                                                                        <  2:635141/140‑1 (MQ=255)                                                    ttatATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAaaggaag                                                                                     >  2:576717/1‑140 (MQ=255)                                                      atatGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAggg                                                                                   >  2:530312/1‑140 (MQ=255)                                                       tatGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatg                                                                                  <  1:655393‑M2/140‑59 (MQ=255)                                                         tGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAaagaaaggaact                                                                                >  2:147178/1‑136 (MQ=255)                                                         tGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGAtt                                                                                >  1:258380/1‑140 (MQ=255)                                                         tGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGAAAGGGAtt                                                                                >  1:643622/1‑140 (MQ=255)                                                          gATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTCTCACAAATAAAACTAAAAAATAGATTGTGAATAATATAAAAGGAAAGGAttt                                                                               >  2:582859/1‑140 (MQ=255)                                                             ataGCGTTTGAGTTTTGTTGTTCTCCTATAAATGTCTTTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTtata                                                                            <  2:396357/140‑1 (MQ=255)                                                                gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTa                                                                         <  2:96880/140‑1 (MQ=255)                                                                    ttGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGTAAGGGATTTATATTAAAAt                                                                     >  2:199157/1‑140 (MQ=255)                                                                     tGAGATTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAAATTGTGTATAATATAAAGGGAAGGGATTTATATTACAAtt                                                                    >  2:74733/1‑140 (MQ=255)                                                                      gAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCAAAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGAGTTATATTAAAAttt                                                                   <  2:492949/140‑1 (MQ=255)                                                                       taaaatgttgtTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAtttt                                                                  >  2:7251/6‑140 (MQ=255)                                                                       aGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAtttt                                                                  >  2:575183/1‑140 (MQ=255)                                                                       aGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAtttt                                                                  >  2:274259/1‑140 (MQ=255)                                                                       aGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATAGAAAAGGAAGGGATGTATATTAAAAtttg                                                                  >  1:10722/1‑139 (MQ=255)                                                                          tttGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGaa                                                               <  2:623375/140‑1 (MQ=255)                                                                           ttgtttTCCTTATATAAATTTCTTTATGTTA‑TTATCAAAAACTGCATCATTAACTGCTAAGTAGAAGTGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAAt                                                              <  1:328924/140‑1 (MQ=255)                                                                                      ctATTAATTTCTGTA‑GTTATTTTTTAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACGAATAAAACTAAAAAATAGAGTGTGTATAATATAAAAGGTAGGGATTTATATAAAAATGTTGAATTCAAAAattat                                                   <  2:516037/140‑1 (MQ=38)                                                                                      ctATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATTGATTGCGGATAATATAAAAGGAAGGGCTTTATATTAAAATTTTGAATTCAAAAattat                                                   >  1:166057/1‑140 (MQ=255)                                                                                         taAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGa                                                >  2:411899/1‑140 (MQ=255)                                                                                         taAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTAACACACATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGa                                                >  2:622249/1‑140 (MQ=255)                                                                                         gaaaTTACTTTA‑GTTATTTTTCAAAAACCGCATCATAAACTGATAAGCAGAAGCGTATCACAAAAAAAAAAAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGa                                                <  2:437482/139‑1 (MQ=255)                                                                                           aaTTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAACATTATTGaaa                                              >  1:370606/1‑140 (MQ=255)                                                                                           aaTTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGaaa                                              >  1:629414/1‑140 (MQ=255)                                                                                           aaTTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGaaa                                              >  2:266441/1‑140 (MQ=255)                                                                                             tttCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAgg                                            <  2:378087/140‑1 (MQ=255)                                                                                              tgcTGGA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAggg                                           <  2:622827/138‑1 (MQ=255)                                                                                               tCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGa                                          >  2:248380/1‑140 (MQ=255)                                                                                                cTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGaa                                         <  1:108854/140‑1 (MQ=255)                                                                                                cTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGaa                                         >  1:255925/1‑140 (MQ=255)                                                                                                cTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAAGAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGaa                                         <  1:65625/140‑1 (MQ=255)                                                                                                 tGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttt                                        <  2:349213‑M2/140‑101 (MQ=255)                                                                                                 tGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAATTAAAAAATAGATTGTGTATAATATAAAAGGAAAGGATTTTTATTAAAATTTTGAATTCAAAATTTATTGAAAGGGaaa                                        >  2:375238/1‑139 (MQ=255)                                                                                                         aTTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGCTTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTAAAAGGGAAGCTACCtt                                 >  2:243646/1‑140 (MQ=255)                                                                                                           ttttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAg                               >  2:235747/1‑140 (MQ=255)                                                                                                           ttttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGAATGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAg                               >  2:78757/1‑140 (MQ=255)                                                                                                            tttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGa                              >  2:550700/1‑140 (MQ=255)                                                                                                             ttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGACAGGGAAGCTAACTTAGaa                             >  1:629739/1‑140 (MQ=255)                                                                                                               cAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAt                           <  1:235747/140‑1 (MQ=255)                                                                                                                   aaCCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataa                       <  1:591125‑M2/140‑118 (MQ=255)                                                                                                                      cGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCt                    <  1:266441/140‑1 (MQ=255)                                                                                                                      cGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAACGGCAGCTACCTTAGTATTTGAATCt                    >  2:542742/1‑140 (MQ=255)                                                                                                                                  tGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc        <  2:555959/140‑1 (MQ=255)                                                                                                                                   gATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTCTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACt       <  1:510126/140‑1 (MQ=255)                                                                                                                                   gATAAGCAGAAGCGTATCAAAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACt       >  1:398884/1‑140 (MQ=255)                                                                                                                                    aTAAGCGGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAACGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACATTAGAAATTGAATCTATTGGCAATaattc      >  2:103793/1‑137 (MQ=255)                                                                                                                                    aTAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTg      >  1:64771/1‑140 (MQ=255)                                                                                                                                    aTAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATGAAATCTATGGCAACTAACTg      >  1:179333/1‑140 (MQ=255)                                                                                                                                     tAAGAAGAAACGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGc     <  2:414274/140‑1 (MQ=255)                                                                                                                                        gCAGAAGCTTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGTATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGGATCTATGGCCACTAACTGCttt  <  1:229045/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                           GTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTA‑GTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTT  >  CP000730/57723‑57996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.