New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 34173 =72 (1.140)5 (0.080) 5/246 NT 7.0% coding (462/480 nt) orfX hypothetical protein OrfX
?CP000730 = 57858 64 (1.070)intergenic (+304/+613) USA300HOU_0048/USA300HOU_0049 hypothetical membrane protein/hypothetical protein

GCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATT  >  CP000730/34034‑34307
                                                                                                                                           |                                                                                                                                      
gCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAAGGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                        <  1:704122/140‑1 (MQ=255)
 cGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCATTATCATTCAGCAAAATGACATTCCCACATCAAAGGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgaggag                                                                                                                                       <  1:202239/140‑1 (MQ=255)
  ggctCAAACGGCCTGCATAAGGACGTCTTACAACTCAGTAACTACTCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACTGAGCATTTAAGATTCTGCGAGgaga                                                                                                                                      <  2:372197/137‑1 (MQ=255)
   gtattagtttaatcagaagacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGaa                                                                                                                                     <  2:108854‑M1/4‑1 (MQ=255)
     tCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGc                                                                                                                                   <  1:610055/140‑1 (MQ=255)
         aCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCatat                                                                                                                               >  1:526544/1‑140 (MQ=255)
                 cacaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAatg                                                                                                                       >  1:704919/1‑140 (MQ=255)
                  acaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAatga                                                                                                                      >  1:584752/1‑140 (MQ=255)
                          gTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAAAAGCATATCATAAATGAAGAGGttt                                                                                                              >  2:644144/1‑140 (MQ=255)
                           tCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttt                                                                                                             >  2:701850/1‑140 (MQ=255)
                            tgtaagaaaaaGTAACGACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATAATGCGAGGAGAAGCATATCATAAATGATGCGGttttt                                                                                                            >  2:337493/11‑140 (MQ=255)
                            cTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATAAAATGATGCGGGTTGTGTTAATTGAACAAGCGTACAGAGCATTTAAGATTATGCGAGGATAAGCATAAGATAAATAATACGGtattt                                                                                                            >  1:54376/1‑140 (MQ=255)
                              tACAACGCAGTAACTACGCATTATCATTCAGCAATATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                          <  1:147487/140‑1 (MQ=255)
                                    taagcttttaagaacttattatatgatatagcgtttgagttttgttgttcttttataaatttctgtatttttttttaatataccgaatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGc                                                                                                    >  1:1514‑M1/104‑140 (MQ=255)
                                     cAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCt                                                                                                   >  1:723047/1‑140 (MQ=255)
                                       gcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTc                                                                                                 <  2:687028‑M1/40‑1 (MQ=255)
                                         aaCTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCAGTTTTTTCAGCCGCTTCAt                                                                                               >  2:22787/1‑140 (MQ=255)
                                              cGCACTATCATTCAGCAAAATGACATTCCCACATCAAAGTATTCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTTATaaatg                                                                                          <  2:149809/140‑3 (MQ=255)
                                               gCACTTTCATTCAGACAAATGACATTCCCACTTCTAATGATGCGGGTTGTGTTAATTGTATAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                         <  1:19477/140‑1 (MQ=255)
                                               gCACTAGCATTCAGCAAAAGGTCATTCCGACGTCAAAGGAGGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                         <  2:624478/140‑1 (MQ=255)
                                                 acctccATTCAGCAAAATTACACTCCCAAATCAAATGCTGCGGGTTGTGTTAATTGAGCAAGTGTACAGAGCATTTAAGATTATACGAGGACAAGCATATCATAAATGATGCGGTTTTTGCAGCCGCTTCATAAAGGGAt                                                                                       <  2:139480/135‑1 (MQ=255)
                                                   tATCATTCAGCAAAATGACATTCCCACATCAAATGATTCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATGATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAttt                                                                                     <  1:216369/140‑1 (MQ=255)
                                                      cATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTTAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGa                                                                                  <  1:244958/140‑1 (MQ=255)
                                                         tatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATg                                                                               <  1:655393‑M1/58‑1 (MQ=255)
                                                         tCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGAACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAACGGGATTTTGAATg                                                                               >  2:394412/1‑140 (MQ=255)
                                                          cAGCAAAATGGCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAAAAAGTGTACAGATCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGt                                                                              <  1:153424/140‑1 (MQ=255)
                                                                aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGGTTTTGAATGTATCAGa                                                                        >  1:193682/1‑140 (MQ=255)
                                                                aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGa                                                                        >  1:119657/1‑140 (MQ=255)
                                                                aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGa                                                                        >  2:317942/1‑140 (MQ=255)
                                                                aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAACCGCATCCTCAAGGGATTTTGAATGTATCAgc                                                                        >  2:388955/1‑139 (MQ=255)
                                                                 aTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTAATAAAGGGATTTTGAATGTATAAGaa                                                                       >  1:367322/1‑140 (MQ=255)
                                                                      actCCCACATCAAATGATGCGGGTTGTGTGAATTGAAAAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                  <  2:17793/138‑1 (MQ=255)
                                                                      aTTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGGTTCTCTTAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                  <  1:713858/140‑1 (MQ=39)
                                                                        tCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                <  1:616235/140‑1 (MQ=255)
                                                                        tCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                >  2:554095/1‑140 (MQ=255)
                                                                         cccACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAg                                                               >  1:631092/1‑140 (MQ=255)
                                                                         cccACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAg                                                               >  1:723158/1‑140 (MQ=255)
                                                                         cccAAATCGAAAGATGGGGGGTGTGTTAATTGAACTAGTGTACAGAGCATTTAAGATTATGCGAGGCGAAGCATATTATAAATGATGCGGTTTTTTCCGCCGCTTCATAAAGGGTTTTTGAATGTATCAGAACATATGAg                                                               <  2:1583/140‑1 (MQ=255)
                                                                            acaTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGtt                                                            <  2:413979/140‑1 (MQ=255)
                                                                                cAAATGATGCGGGTTGTGGTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGATAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtg                                                        <  1:23166/140‑1 (MQ=255)
                                                                                 aacggattCGGGCTGGGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACACATGAGGTTTAtgt                                                       <  1:160912/136‑1 (MQ=38)
                                                                                 aaaTGATGCGGGTTGTGTTAATTGAAAAAGTTTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgt                                                       <  1:718541/140‑1 (MQ=255)
                                                                                  aaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGAGAGGAGAAGCATATCATAAAGGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                      >  2:325/1‑140 (MQ=255)
                                                                                      atgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGCTTATGTGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTTAATGTATCAGAACATATGAGGTTTATGTGAAtt                                                  >  1:319330/1‑140 (MQ=255)
                                                                                         tgggTTTTGGTAATTGAACAAGTGTAAAGAGCATTTAAGTTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCt                                               <  1:298631/139‑1 (MQ=255)
                                                                                         cGGGTTGGGTTAATTGAACAAGGGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCt                                               <  2:491180/140‑1 (MQ=255)
                                                                                           ggTTGTGTTAATTGAACAAGTTTAAAGAGCATTTAAGTTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGTTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGt                                             <  1:154807/140‑1 (MQ=255)
                                                                                            gTTGTGTTAATTGAGCAAGGGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGATTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATAAGAACATATGAGGTTTATGTGAATTGCTGtt                                            >  1:400546/1‑140 (MQ=255)
                                                                                            gTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGATGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCATAACATATGAGGTTTATGTGAATAGCTGtt                                            >  1:234770/1‑140 (MQ=255)
                                                                                            gTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGtt                                            >  1:225412/1‑140 (MQ=255)
                                                                                              tgtgTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTAt                                          <  2:669774/140‑1 (MQ=255)
                                                                                               gtgtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGCTTTTGAATGTATCAGAACATATGAGGTTAATGTGAATTGATGTTATg                                         >  1:475780/1‑140 (MQ=255)
                                                                                                 gtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtt                                       >  1:160218/1‑140 (MQ=255)
                                                                                                  ttAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttt                                      <  1:337493/140‑1 (MQ=255)
                                                                                                   tgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtttt                                     <  2:349213‑M1/100‑1 (MQ=255)
                                                                                                   caaTTGAACAAGGGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtttt                                     <  2:615020/139‑1 (MQ=255)
                                                                                                    aaTTGAACAAGTGTACAGTGCATTTAAGTTTATGCGAGGTGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttttt                                    <  1:76938/140‑1 (MQ=255)
                                                                                                    aaTTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttttt                                    <  2:438071/140‑1 (MQ=255)
                                                                                                     aTTGAACTAGTGTACTTAGCTTTTAAGATTATTCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTa                                   <  1:238768/140‑1 (MQ=37)
                                                                                                        gAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaaga                                <  2:413698/140‑1 (MQ=255)
                                                                                                        gAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTGCAGCCGCTTCATAAAGGGTTTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaaga                                <  2:40449/140‑1 (MQ=255)
                                                                                                         aaCAAGTGTACAGATCATTGAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaagaa                               <  2:655354/140‑1 (MQ=255)
                                                                                                           cAAGTTTACAGAGCCTTTAAGATTATGCGAAGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGc                             <  2:469928/140‑1 (MQ=255)
                                                                                                           cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGc                             <  2:723158/140‑1 (MQ=255)
                                                                                                           cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGc                             >  1:645309/1‑140 (MQ=255)
                                                                                                             aGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCtt                           >  1:551384/1‑140 (MQ=255)
                                                                                                              gtgtACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTa                          >  1:522702/1‑140 (MQ=255)
                                                                                                              gtgtACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATAAGAACCTAAGAGGGTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTa                          >  1:677372/1‑140 (MQ=255)
                                                                                                                    aaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATaa                    <  1:591125‑M1/117‑1 (MQ=255)
                                                                                                                     gagCATTTAAGATTATTCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAg                   <  2:572241/140‑1 (MQ=255)
                                                                                                                       gCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTa                 <  2:235388/140‑1 (MQ=255)
                                                                                                                       gCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTa                 >  1:679818/1‑140 (MQ=255)
                                                                                                                       gCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTa                 <  1:545059/140‑1 (MQ=255)
                                                                                                                          tttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATg              >  2:260687/1‑140 (MQ=255)
                                                                                                                           ttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCGTAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTATTGa             >  2:61020/1‑140 (MQ=255)
                                                                                                                                aTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc        <  1:684241/140‑1 (MQ=255)
                                                                                                                                  tATGCGATGAGAATCATATCATTAATGATGCGGTTTTTTCAGCCTCTTTATAAAGTGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:43705/140‑1 (MQ=37)
                                                                                                                                  tATGCGATGAGAAGTATATTATATATGATGCGGTTTTTTCTGCCGCTTCATAAAGGGATTTTGAATGTATCAGATCATATGAGGCTTACGTTAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:278451/140‑1 (MQ=37)
                                                                                                                                  tATGCGAGGGGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGATTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGTATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:139897/140‑1 (MQ=255)
                                                                                                                                  tATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:701850/140‑1 (MQ=255)
                                                                                                                                    tGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTNCTGTTCTGNTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGa    >  2:435282/1‑140 (MQ=255)
                                                                                                                                      cGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATTAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAtt  >  1:687591/1‑140 (MQ=255)
                                                                                                                                      cGAGGAGAAGCATATAATAAATGATGCGGATTTTTCAGCCGCTTCATTAAGAGATAATGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATGAATAATGAGGATCCTGAtt  >  2:282234/1‑140 (MQ=37)
                                                                                                                                           |                                                                                                                                      
GCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATT  >  CP000730/34034‑34307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.