| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2080726 = | 72 (0.890) | 12 (0.160) | 10/252 | 8.9 | 15.7% | intergenic (‑194/+49) | USA300HOU_1938/USA300HOU_1939 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2080759 = | 64 (0.870) | intergenic (‑227/+16) | USA300HOU_1938/USA300HOU_1939 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGTAATGATGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2080878‑2080726‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagacttggggttATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCGACTAA > CP000730/2080759‑2080897 GTGTAATGATGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACC < 1:169122/141‑1GTGTAATGATGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACC < 1:710185/141‑1 TGTAATGACGGGGTGGCAAGAAGGGATTATTACACTTATTACAGGTTGCTTACTAATTATTTTTCGACTTTGGTTAGAACCGAAAAGAAAAAAAAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCA < 2:152447/141‑1 GATGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTG > 1:764563/1‑141 TGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGG > 1:835972/1‑141 TGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTCGGG > 2:432741/1‑141 GTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGG > 2:601638/1‑141 GGTGGCAAGAAGGTATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTT < 1:208053/141‑1 AAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAG > 1:73655/1‑141 AAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTAGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTCCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGT > 2:124785/1‑141 AATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTG > 2:408082/1‑141 CATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAAT > 1:215921/1‑104 CATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAAT < 2:215921/104‑1 GTCTGCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAGATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCTCTTCTTGCCACCACATCATT > 2:593387/1‑141 GCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTTTTTTTTTTTTTTAGTTCTAACCAAAGTCGAAAAATAATTAGTATGCCACATGTCATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACAC > 2:318627/1‑141 GCTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACcc > 2:639137/1‑139 CTGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCTACCTTTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTAAACT > 2:99634/1‑141 TGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTA > 2:183536/1‑141 TGGTACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTA > 1:184291/1‑141 ACCAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACC < 2:73655/141‑1 CAGACTTGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTC < 2:793163/141‑1 TGGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCG > 1:686653/1‑141 GGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGTAAAATAATTAGTAAGCTACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCGA > 2:851440/1‑141 GGGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCGA < 2:62175/141‑1 GGGTTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCGAC < 2:604051/141‑1 TTATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCGACTAA < 2:366266/141‑1 GTGTAATGATGTGGTGGCAAGAAGGGATGATGACACTTATTACAGGTGGCTTACTAATTATTTTTCGACTTTGGTTAGAACTGAAATGGAAAAATAAAAAATGATCCTACACACATAAATAACCCCAAGTCTGCTGGTACCAGACTTGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2080878‑2080726‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagacttggggttATTTATGTGTGTAGGATCATTTTTTATTTTTCCATTTCAGTTCTAACCAAAGTCGAAAAATAATTAGTAAGCCACCTGTAATAAGTGTCATCATCCCTTCTTGCCACCACATCATTACACTACACCTCCGTTCGACTAA > CP000730/2080759‑2080897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |