New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 346179	79 (0.980)	3 (0.050) +TTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAA	3/188	10.7	5.3%	intergenic (+129/‑7)	USA300HOU_0310/USA300HOU_0311	hypothetical membrane protein/hypothetical protein
	?	CP000730	= 349794	80 (0.990)					intergenic (+346/‑240)	USA300HOU_0316/USA300HOU_0317	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACTATTAATATCTTTTTTACTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGGAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/346107‑346179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTATTTTGTCTTTCTATTTATTTAACTATTT  <  CP000730/349794‑349763                                                                          |||||||||||||||||||||||||||||||||||||||||||||                                 TACTATTAATATCTTTTTTTTTTTTTTTTTAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATT‑TTTTATTTTTCTATTTATcg          >  2:413519/1‑139                               AAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTTGTCTTTCTATTTATTTAACTATTT  >  1:858121/1‑120                               AAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTTGTCTTTCTATTTATTTAACTATTT  <  2:858121/120‑1                                                                          |||||||||||||||||||||||||||||||||||||||||||||                                 TACTATTAATATCTTTTTTACTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGGAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/346107‑346179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTATTTTGTCTTTCTATTTATTTAACTATTT  <  CP000730/349794‑349763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.