New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 346179	79 (0.980)	3 (0.050) +TTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAA	3/188	10.7	5.3%	intergenic (+129/‑7)	USA300HOU_0310/USA300HOU_0311	hypothetical membrane protein/hypothetical protein
	?	CP000730	= 349794	80 (0.990)					intergenic (+346/‑240)	USA300HOU_0316/USA300HOU_0317	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAATGAGTAA  >  CP000730/349654‑349930                                                                                                                                             |                                                                                                                                         ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTTTTTTTTTTATAAATAGTTAAATAAATAGAAAGACAAaataat                                                                                                                                          >  2:156337/1‑141 (MQ=17)    aTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAg                                                                                                                                       >  1:279486/1‑141 (MQ=255)       ttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                                                                                                                    >  1:797074/1‑141 (MQ=255)       ttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTAAGAAAAGGATAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                                                                                                                    <  2:672327/141‑1 (MQ=255)       aaataataattattATAATTGTATTACATAAAGATTTTGATAAATTTTATTTAAAAAAAAAAAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                                                                                                                    <  2:706537/133‑1 (MQ=11)         aTCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTAAGAAAAAAAAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGa                                                                                                                                  <  2:595418/141‑1 (MQ=14)          tCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                                                                                                                 <  1:787851/141‑1 (MQ=255)          tCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                                                                                                                 <  2:629386/141‑1 (MQ=255)             aGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGttt                                                                                                                              <  1:713614/141‑1 (MQ=255)              gATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGtttt                                                                                                                             >  2:333909/1‑141 (MQ=255)                   ttatAATTTTATTACATATAGGTGCTGGTAAATTTTATTTAAGAAAAAAAAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                                                                                                                        <  2:125228/141‑1 (MQ=17)                    tataATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                                                                                                                       <  1:333909/141‑1 (MQ=255)                       aaTTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt                                                                                                                    <  1:48453/141‑1 (MQ=255)                           gTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAttt                                                                                                                <  1:446096/141‑1 (MQ=255)                            tATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTa                                                                                                               >  1:589548/1‑141 (MQ=255)                             aTTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAACTAGTGAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTAc                                                                                                              >  2:666593/1‑141 (MQ=255)                              ttACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACa                                                                                                             >  1:828857/1‑141 (MQ=255)                                 cATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAaat                                                                                                          <  2:96228/141‑1 (MQ=255)                                     taGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATATTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataata                                                                                                      <  1:8352/141‑1 (MQ=255)                                     taGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataata                                                                                                      >  2:340442/1‑141 (MQ=255)                                     taGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataata                                                                                                      >  1:784615/1‑141 (MQ=255)                                       ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatata                                                                                                    <  1:417078/141‑1 (MQ=255)                                        gTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa                                                                                                   <  2:94370/141‑1 (MQ=255)                                         tGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTTCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataat                                                                                                  >  2:89999/1‑141 (MQ=255)                                           cTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAc                                                                                                >  2:18833/1‑141 (MQ=255)                                           cTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAc                                                                                                >  1:820330/1‑141 (MQ=255)                                               tAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCa                                                                                            <  1:533912/141‑1 (MQ=255)                                                aaaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATGATACTGCaa                                                                                           <  1:762524/141‑1 (MQ=255)                                                aaaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaa                                                                                           >  2:114859/1‑141 (MQ=255)                                                aaaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaa                                                                                           <  1:373162/141‑1 (MQ=255)                                                 aaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaaa                                                                                          <  1:696251/141‑1 (MQ=255)                                                      tatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTc                                                                                     <  1:188025/141‑1 (MQ=255)                                                       atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTTTTTTTTTTTTAAATAGTTAAATAAATAGAAATACTATATAATGAGTAGGAGTTTTAGGGCTATTATTTACCATTAATATAATACTGCAATGACtgg                                                                                    >  2:780953/1‑139 (MQ=21)                                                       atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTTTTTTTATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCg                                                                                    >  2:627452/1‑141 (MQ=255)                                                        tttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGa                                                                                   <  2:233570/141‑1 (MQ=255)                                                           aCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAat                                                                                <  1:294866/141‑1 (MQ=255)                                                           aCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAat                                                                                <  1:793103/141‑1 (MQ=255)                                                              aaataacAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAattat                                                                             <  2:836276/135‑1 (MQ=255)                                                                    cAAAAAAGTATATACTATTAATATCTTTTTTTTTTTTTTTTTAAATAGATAAATAAATAGAAAGACAAAATAATGAGTTGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAAACTATAAATTATTTATaa                                                                       >  2:533849/1‑141 (MQ=21)                                                                    cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAACTAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGaa                                                                       >  1:631303/1‑141 (MQ=255)                                                                    cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGaa                                                                       >  2:202513/1‑141 (MQ=255)                                                                     aaaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCCAAATTACTTAGAAt                                                                      >  1:442605/1‑141 (MQ=255)                                                                      aaaaaGTATCTACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAACTAATATAATTCTGCAAAGACTCGAAATTATTTAGAAtt                                                                     <  1:674106/141‑1 (MQ=255)                                                                      aaaaaGTATATACTATTAATATCTTTTTTTTTATTTTTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAAtt                                                                     >  2:525635/1‑141 (MQ=255)                                                                           gTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGt                                                                >  2:68011/1‑141 (MQ=255)                                                                             atataCTATTAATACCTTTTTTTTTTTTTTTTTAAATAGATAAATAAATAGAAAGATATAATAATGTGTATGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCTAAATTATTTAGATTTctatttt                                                              >  2:370298/1‑135 (MQ=255)                                                                              tataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTAt                                                             >  1:592963/1‑141 (MQ=255)                                                                                taCTATTAATATCTTTTTTTTTTTTTTTTTAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTTTTTATTTTTCTATTTATCg                                                           >  2:413519/1‑141 (MQ=21)                                                                                taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCg                                                           <  2:279486/141‑1 (MQ=255)                                                                                     ttAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACa                                                      <  1:574847/141‑1 (MQ=255)                                                                                     ttAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACa                                                      <  2:519757/141‑1 (MQ=255)                                                                                       aaTATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAAt                                                    >  1:12151/1‑141 (MQ=255)                                                                                            cTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTg                                               >  1:264080/1‑141 (MQ=255)                                                                                            cTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTg                                               <  1:324576/141‑1 (MQ=255)                                                                                                tttGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGt                                           <  1:323720/141‑1 (MQ=255)                                                                                                  tGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTAGGAAGTCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTa                                         <  1:407831/141‑1 (MQ=38)                                                                                                   gCTATAATTATAAATAGTTTAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTGGGGCTATTATTTACAAATAATATAATTCAGCAAAGGCTCGAATTTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTAt                                        <  2:109684/141‑1 (MQ=38)                                                                                                   gCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTAt                                        >  1:188498/1‑141 (MQ=255)                                                                                                         aTTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGt                                  <  1:794797/141‑1 (MQ=255)                                                                                                              aaaTAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCAt                             >  1:809790/1‑141 (MQ=255)                                                                                                              aaaTAGCTAAATAAAAAGAAAGACAAAATAATGAGTAGGCGGGTCAGGGCTATTATTTACAAATCATATAATACTGAAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATATTTGCAGTTATATTAGTTCCAt                             >  2:56930/1‑141 (MQ=255)                                                                                                               aaTAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGACATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCAtt                            >  1:343827/1‑141 (MQ=255)                                                                                                               aaTAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCAtt                            >  1:682539/1‑141 (MQ=255)                                                                                                                 tAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAg                          <  1:832255/141‑1 (MQ=255)                                                                                                                  aGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAgt                         <  2:306910/141‑1 (MQ=255)                                                                                                                   gTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAgtg                        >  2:100022/1‑141 (MQ=255)                                                                                                                   gTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAgtg                        <  2:84298/141‑1 (MQ=255)                                                                                                                   gTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAgtg                        >  2:271504/1‑141 (MQ=255)                                                                                                                   gTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAgtg                        >  1:325978/1‑141 (MQ=255)                                                                                                                   gTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAgtg                        >  1:313407/1‑141 (MQ=255)                                                                                                                   gTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAAAATTCCATTTATATTAACAATTGGTGCACTAAGGTTAGTTCTATAAgtg                        >  2:255121/1‑141 (MQ=37)                                                                                                                        ataaataGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTAttt                   <  2:683118/141‑1 (MQ=255)                                                                                                                         taaataGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTa                  <  2:590799/141‑1 (MQ=255)                                                                                                                         taaataGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTa                  >  2:440139/1‑141 (MQ=255)                                                                                                                          aaataGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAg                 <  2:555960/141‑1 (MQ=255)                                                                                                                            ataGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGt               >  1:153857/1‑141 (MQ=255)                                                                                                                             taGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGtt              >  2:341591/1‑141 (MQ=255)                                                                                                                                   gACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAAt        >  1:475132/1‑141 (MQ=255)                                                                                                                                     cAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAATGa      >  2:68631/1‑141 (MQ=255)                                                                                                                                        aataatGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAATGAGTa   <  1:694939/141‑1 (MQ=255)                                                                                                                                         ataatGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAATGAGTaa  >  1:277316/1‑141 (MQ=255)                                                                                                                                         ataatGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAATGAGTaa  <  2:527542/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         ATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGACTCGAAATTATTTAGAATTCCAGTTATCGTAACAATAGTTGCAGTTATTTTAGTTCCATTAGTGTATTTAGGTTTAAAATGAGTAA  >  CP000730/349654‑349930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.