| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2857675 = | 28 (0.820) | 4 (0.130) | 4/258 | 4.8 | 10.8% | coding (90/96 nt) | USA300HOU_2700 | hypothetical protein |
| ? | CP000730 | 2857737 = | 40 (1.260) | coding (28/96 nt) | USA300HOU_2700 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGAGAGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2857824‑2857675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAATTATTT > CP000730/2857737‑2857875 AAGATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑T < 2:291625/141‑1 AGATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TG < 1:318192/141‑1 GATTATAATTAAATTTTAAGCAGAAATACTGAAATTTTGAGTTCGAAAGCATTGAATGTTGGATAAATACATTTTCAATAGAAAAATAAGCTCTCAATATGAAGTCCTCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑Tca > 2:75653/1‑139 GATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGA < 2:98068/141‑1 GATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGA > 1:258407/1‑141 GATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGA > 2:96044/1‑141 TATAATTAACTTTTAAACAGAAATACTCAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGACACGATTTAAAGATGACTAC‑‑‑‑TGAGAG > 2:226678/1‑141 ATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGAGAGCGTA > 1:351598/1‑141 GAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTT > 2:35341/1‑141 TACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAT > 2:188023/1‑141 CTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATA > 1:222001/1‑141 TCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGG > 2:113111/1‑141 GAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGA > 1:239081/1‑141 AGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCTAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGATGCGCTATGCTTATGAATATTACGAAGTTAGAGAA > 2:340053/1‑141 GAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAAT > 1:105650/1‑141 TATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAATTATTT < 1:315662/141‑1 TATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAATTATTT < 1:30442/141‑1 TATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAATTATTT < 1:173197/141‑1 TATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAATTATTT < 1:98068/141‑1 AAGATTATAATTAAATTTTAAACAGAAATACTGAAATTTTAAATTCGAAAGCATTGAATTTTGGATAAATACATTTTAAATAGAAAAATACGCTCTCAAAATGAAGTCATCTCTAAAAGAAACGATTTAAAGATGACTAC‑‑‑‑TGAGAGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2857824‑2857675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagagcgtaTTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAATTATAATCTTTAATACAGGAGGCGCTATGCTTATGAATATTGCGAAGTTAGAGAATTATTT > CP000730/2857737‑2857875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |