New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2857675 =	28 (0.820)	4 (0.130)	4/258	4.8	10.8%	coding (90/96 nt)	USA300HOU_2700	hypothetical protein
	?	CP000730	2857737 =	40 (1.260)					coding (28/96 nt)	USA300HOU_2700	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAATTACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAT  >  CP000730/2857536‑2857815                                                                                                                                            |                                                                                                                                             ttAATTACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTa                                                                                                                                             >  1:339815/1‑141 (MQ=255)   aaTTACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACg                                                                                                                                           <  1:347147/141‑1 (MQ=255)          tGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCag                                                                                                                                    >  1:226678/1‑141 (MQ=255)                            aTTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCAATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGt                                                                                                                  <  1:277520/141‑1 (MQ=255)                                ggAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCt                                                                                                              >  1:172423/1‑141 (MQ=255)                                         gTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGTATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGAt                                                                                                     >  1:22390/1‑141 (MQ=255)                                               tAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTc                                                                                               <  1:165356/141‑1 (MQ=255)                                                   acacacATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCCTATTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTACATCGTTTCTTTTAGAGATGACTTCAttt                                                                                           >  2:303353/1‑141 (MQ=255)                                                   acacAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCAttt                                                                                           <  1:40248/141‑1 (MQ=255)                                                    cacaAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCAtttt                                                                                          >  2:262357/1‑141 (MQ=255)                                                                aGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAttt                                                                              >  1:204233/1‑141 (MQ=255)                                                                     aGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTa                                                                         >  2:20102/1‑141 (MQ=255)                                                                       gCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTAAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAtt                                                                       <  1:191221/141‑1 (MQ=255)                                                                          aCTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTATTCCATTATGCTACGCACTAAGTAAACATATTAAAATTGTTTCATTTAGAGATGACTTCATTTTGAGAGAGTATTTTTCTATTTaa                                                                    >  1:368738/1‑141 (MQ=255)                                                                                cTTGCAACTACCTTTGTATTGTTGCATTTTTTTTTTTTTTTTTCACTTCTTCCATTATGCTACGCTCTCATTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGTGCGTATTTTTCTATTTAAATTGtt                                                              >  2:126534/1‑140 (MQ=255)                                                                                         aCCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTAtt                                                            >  2:345886/1‑134 (MQ=255)                                                                                         aCCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTAtt                                                            <  1:345886/134‑1 (MQ=255)                                                                                                    gttgCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCt                                          >  2:150576/1‑141 (MQ=255)                                                                                                     ttgCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCtt                                         >  2:135091/1‑141 (MQ=255)                                                                                                             ttAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAttt                                 <  1:122699/141‑1 (MQ=255)                                                                                                              tAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTa                                >  1:30495/1‑141 (MQ=255)                                                                                                                   acCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAtt                           <  1:223473/141‑1 (MQ=255)                                                                                                                        gCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGt                      <  1:123477/141‑1 (MQ=255)                                                                                                                             cttcttCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTc                 <  2:46499/141‑1 (MQ=255)                                                                                                                                cttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGt              >  2:247662/1‑141 (MQ=255)                                                                                                                                      ttATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTaaaa        >  1:85348/1‑141 (MQ=255)                                                                                                                                       tATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAAt       >  1:289599/1‑141 (MQ=255)                                                                                                                                         tGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTACTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAAttt     <  1:352773/141‑1 (MQ=255)                                                                                                                                            tACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAt  <  1:351598/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             TTAATTACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAT  >  CP000730/2857536‑2857815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.