New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1383498 =	38 (1.110)	4 (0.120)	4/266	4.9	9.6%	coding (2421/2706 nt)	acnA	aconitate hydratase
	?	CP000730	1383517 =	39 (1.190)					coding (2440/2706 nt)	acnA	aconitate hydratase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGTCATGTGGTTGAACATTTTCATCAATATTAACAGAAATTTCTTCTGTACCATCTAGACCAAGAGAATCAGCTGATTCACCTTTTTTAAACTCTAATGGTAATACACCCATCATAACTAAATTTGAACGATGGATACGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1383641‑1383498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcaAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTCAAAGTTA  >  CP000730/1383517‑1383652                                                                                                                                                                                                                                                                                          TAGTCATGTGGTTGAACATTTTCATCAATATTAACAGAAATTTCTTCTGTACCATCTAGACCAAGAGAATCAGCTGATTCACCTTTTTTAAACTCTAATGGTAATACACCCATCATAACTAAATTTGAACGATGGATACGT                                                                                                                                             >  1:159987/1‑141    TCATGTGGTTGAACATTTTCATCAATATTAACAGAAATTTCTTCTGTACCATCTAGACCAAGAGAATCAGCTGATTCACCTTTTTTAAACTCTAATGGTAATACACCCATCATAACTAAATTTGAACGATGGATACGTTCA                                                                                                                                          <  2:38042/141‑1                                                                                                      TAATACACCCATCATAACTAAATTTGAACGATGGATACGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTT                                             >  1:220690/1‑136                                                                                                      TAATACACCCATCATAACTAAATTTGAACGATGGATACGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTT                                             <  2:220690/136‑1                                                                                                                                  CGATGGATACGTTCAAATTTAGTCATGATGGGTGTATTACAATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCGTGGTCTAGATGATACAGAAGAAAGTTCTGTTAAGATTAATGAAAATGTTCAACCACATGACTAC            >  2:354554/1‑141                                                                                                                                    ATGGATACGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGT          >  1:123206/1‑141                                                                                                                                            GTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGACATTTATCATCGAATTGATAAAAATGTTCAACCACATGAATAAGTCAAAGTTA  >  1:144559/1‑141                                                                                                                                                                                                                                                                                          TAGTCATGTGGTTGAACATTTTCATCAATATTAACAGAAATTTCTTCTGTACCATCTAGACCAAGAGAATCAGCTGATTCACCTTTTTTAAACTCTAATGGTAATACACCCATCATAACTAAATTTGAACGATGGATACGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1383641‑1383498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcaAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTCAAAGTTA  >  CP000730/1383517‑1383652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.