New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1383498 =	38 (1.110)	4 (0.120)	4/266	4.9	9.6%	coding (2421/2706 nt)	acnA	aconitate hydratase
	?	CP000730	1383517 =	39 (1.190)					coding (2440/2706 nt)	acnA	aconitate hydratase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTGCAATGAAATATAAAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGA  >  CP000730/1383361‑1383638                                                                                                                                          |                                                                                                                                             gctgcAATGAAATATAAAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGaa                                                                                                                                           >  1:277282/1‑141 (MQ=255)         gAAATATAAAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCa                                                                                                                                   <  1:48015/141‑1 (MQ=255)         gAAATATAAAGAAGATGGTACAGGTTTAGTGGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACgatggat                                                                                                                                   <  2:145207/141‑7 (MQ=255)              ataAAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGtt                                                                                                                              >  2:175379/1‑141 (MQ=255)              ataAAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTAATAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGtt                                                                                                                              >  2:175394/1‑141 (MQ=255)                 aagaagATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTTGTGATTGGGCAGCAAAAAGTACAAACTTATTATGTGTTAAAACAGTTATTGCACAAAGTTATTAACGTATCCATCGTTCaa                                                                                                                           >  2:108825/1‑141 (MQ=255)                       aTGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAg                                                                                                                     >  1:158914/1‑141 (MQ=255)                       aTGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTAATCTCGTGACTGGGAAGCAAAAGGTACAAACTTATTAGGTGGTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAg                                                                                                                     <  2:144319/141‑1 (MQ=255)                        tGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTANGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTNCAAATTTAGt                                                                                                                    >  1:90078/1‑141 (MQ=255)                            aCAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTatg                                                                                                                >  2:79913/1‑141 (MQ=255)                                  ttAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGgt                                                                                                          <  2:152835/141‑1 (MQ=255)                                     gTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTa                                                                                                       <  1:360013/141‑1 (MQ=255)                                             aGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCAtt                                                                                               <  1:201233/141‑1 (MQ=255)                                                  gTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTCTGATGGCTGTATTACCAtaaaaaa                                                                                          <  2:353850/141‑7 (MQ=255)                                                    aaCGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGttt                                                                                        >  1:367668/1‑141 (MQ=255)                                                     aCGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTa                                                                                       <  2:158914/141‑1 (MQ=255)                                                                 tggGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAAt                                                                           <  2:109992/141‑1 (MQ=255)                                                                     ttCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGc                                                                       <  1:291763/141‑1 (MQ=255)                                                                     ttCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGc                                                                       <  1:291772/141‑1 (MQ=255)                                                                      tCATCTCGTTACTGGGCAGTAAAATGTATAAACTTATTAGGTGTTAAAACAGTTATTGCAAAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGAGGGGTGTATTACCAATAAAAATTAAAAAAGGTGAATCAGCt                                                                      <  2:179255/141‑1 (MQ=255)                                                                        aTCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGa                                                                    >  1:188843/1‑141 (MQ=255)                                                                           tcGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATtc                                                                 >  1:232895/1‑141 (MQ=255)                                                                               gACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACATATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCtt                                                             >  1:213055/1‑141 (MQ=255)                                                                               gACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACATATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCtt                                                             >  1:212983/1‑141 (MQ=255)                                                                                   gggCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTc                                                         <  2:2852/141‑1 (MQ=255)                                                                                           aaaGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGt                                                 >  1:115167/1‑141 (MQ=255)                                                                                           aaaGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGt                                                 >  1:335916/1‑141 (MQ=255)                                                                                           aaaGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGt                                                 >  2:17100/1‑141 (MQ=255)                                                                                               gTACAAACTTATTAGGTGTTAAAACAGTTATAGCACAAAGTTATGAACGTATCCATCGTTAAAATTTAGTTATGATGGGTGTATTAAAAAAAAAAAAAAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACag                                             <  2:230569/141‑1 (MQ=255)                                                                                                 aCAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACagaa                                           <  1:179821/141‑1 (MQ=255)                                                                                                   aaaCTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACagaaga                                         <  1:266734/141‑1 (MQ=255)                                                                                                        tattaGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAAttt                                    >  2:2105/1‑141 (MQ=255)                                                                                                              gtgtTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTa                              >  1:208798/1‑141 (MQ=255)                                                                                                                         gTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGaa                   >  1:142612/1‑141 (MQ=255)                                                                                                                            aTTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAAt                >  2:144377/1‑141 (MQ=255)                                                                                                                               gCACAAACTTATGAACGTAACCATCGTTCAAATGTAGTTATGATGGGTGTATTACCATTAGAGTGTAAAAAAGGTGAATCAGCTAACTCTCTTGGTCTAGTTGTTACAGAAGAAATTTCCGGTAATATTGATGAAAATGtt             >  2:87400/1‑141 (MQ=255)                                                                                                                                 acaAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGTTTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCa           <  1:3314/141‑1 (MQ=255)                                                                                                                                         aTGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATg   >  1:44900/1‑141 (MQ=255)                                                                                                                                          tGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGa  >  2:38042/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                             GCTGCAATGAAATATAAAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGA  >  CP000730/1383361‑1383638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.