New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1383498 =	38 (1.110)	4 (0.120)	4/266	4.9	9.6%	coding (2421/2706 nt)	acnA	aconitate hydratase
	?	CP000730	1383517 =	39 (1.190)					coding (2440/2706 nt)	acnA	aconitate hydratase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTCAAAGTTA  >  CP000730/1383377‑1383652                                                                                                                                             |                                                                                                                                        aagaagATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTTGTGATTGGGCAGCAAAAAGTACAAACTTATTATGTGTTAAAACAGTTATTGCACAAAGTTATTAACGTATCCATCGTTCaa                                                                                                                                         >  2:108825/1‑141 (MQ=255)       aTGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAg                                                                                                                                   >  1:158914/1‑141 (MQ=255)       aTGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTAATCTCGTGACTGGGAAGCAAAAGGTACAAACTTATTAGGTGGTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAg                                                                                                                                   <  2:144319/141‑1 (MQ=255)        tGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTANGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTNCAAATTTAGt                                                                                                                                  >  1:90078/1‑141 (MQ=255)            aCAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTatg                                                                                                                              >  2:79913/1‑141 (MQ=255)                  ttAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGgt                                                                                                                        <  2:152835/141‑1 (MQ=255)                     gTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTa                                                                                                                     <  1:360013/141‑1 (MQ=255)                             aGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCAtt                                                                                                             <  1:201233/141‑1 (MQ=255)                                  gTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTCTGATGGCTGTATTACCAtaaaaaa                                                                                                        <  2:353850/141‑7 (MQ=255)                                    aaCGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGttt                                                                                                      >  1:367668/1‑141 (MQ=255)                                     aCGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTa                                                                                                     <  2:158914/141‑1 (MQ=255)                                                 tggGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAAt                                                                                         <  2:109992/141‑1 (MQ=255)                                                     ttCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGc                                                                                     <  1:291772/141‑1 (MQ=255)                                                     ttCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGc                                                                                     <  1:291763/141‑1 (MQ=255)                                                      tCATCTCGTTACTGGGCAGTAAAATGTATAAACTTATTAGGTGTTAAAACAGTTATTGCAAAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGAGGGGTGTATTACCAATAAAAATTAAAAAAGGTGAATCAGCt                                                                                    <  2:179255/141‑1 (MQ=255)                                                        aTCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGa                                                                                  >  1:188843/1‑141 (MQ=255)                                                           tcGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATtc                                                                               >  1:232895/1‑141 (MQ=255)                                                               gACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACATATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCtt                                                                           >  1:212983/1‑141 (MQ=255)                                                               gACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACATATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCtt                                                                           >  1:213055/1‑141 (MQ=255)                                                                   gggCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTc                                                                       <  2:2852/141‑1 (MQ=255)                                                                           aaaGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGt                                                               >  1:335916/1‑141 (MQ=255)                                                                           aaaGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGt                                                               >  2:17100/1‑141 (MQ=255)                                                                           aaaGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGt                                                               >  1:115167/1‑141 (MQ=255)                                                                               gTACAAACTTATTAGGTGTTAAAACAGTTATAGCACAAAGTTATGAACGTATCCATCGTTAAAATTTAGTTATGATGGGTGTATTAAAAAAAAAAAAAAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACag                                                           <  2:230569/141‑1 (MQ=255)                                                                                 aCAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACagaa                                                         <  1:179821/141‑1 (MQ=255)                                                                                   aaaCTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACagaaga                                                       <  1:266734/141‑1 (MQ=255)                                                                                        tattaGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAAttt                                                  >  2:2105/1‑141 (MQ=255)                                                                                              gtgtTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTa                                            >  1:208798/1‑141 (MQ=255)                                                                                                         gTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGaa                                 >  1:142612/1‑141 (MQ=255)                                                                                                            aTTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAAt                              >  2:144377/1‑141 (MQ=255)                                                                                                               gCACAAACTTATGAACGTAACCATCGTTCAAATGTAGTTATGATGGGTGTATTACCATTAGAGTGTAAAAAAGGTGAATCAGCTAACTCTCTTGGTCTAGTTGTTACAGAAGAAATTTCCGGTAATATTGATGAAAATGtt                           >  2:87400/1‑141 (MQ=255)                                                                                                                 acaAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGTTTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCa                         <  1:3314/141‑1 (MQ=255)                                                                                                                         aTGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATg                 >  1:44900/1‑141 (MQ=255)                                                                                                                          tGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGa                >  2:38042/1‑141 (MQ=255)                                                                                                                             aCGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTa             <  1:159987/141‑1 (MQ=255)                                                                                                                              cgatggatacGTTCAAATTTAGTCATGATGGGTGTATTACAATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCGTGGTCTAGATGATACAGAAGAAAGTTCTGTTAAGATTAATGAAAATGTTCAACCACATGACTAc            >  2:354554/10‑141 (MQ=255)                                                                                                                                atggatacGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGt          >  1:123206/8‑141 (MQ=255)                                                                                                                                 aTCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTc         <  2:188843/141‑1 (MQ=255)                                                                                                                                 aTCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGGCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTc         <  2:90078/141‑1 (MQ=255)                                                                                                                                    cATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTCaaa      <  2:6216/141‑1 (MQ=255)                                                                                                                                      tCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTCAAAGt    <  1:248764/141‑1 (MQ=255)                                                                                                                                        gTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGACATTTATCATCGAATTGATAAAAATGTTCAACCACATGAATAAGTCAAAGTTa  >  1:144559/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                        AAGAAGATGGTACAGGTTTAGTTGTATTAGCTGGTAACGATTATGGTATGGGTTCATCTCGTGACTGGGCAGCAAAAGGTACAAACTTATTAGGTGTTAAAACAGTTATTGCACAAAGTTATGAACGTATCCATCGTTCAAATTTAGTTATGATGGGTGTATTACCATTAGAGTTTAAAAAAGGTGAATCAGCTGATTCTCTTGGTCTAGATGGTACAGAAGAAATTTCTGTTAATATTGATGAAAATGTTCAACCACATGACTACGTCAAAGTTA  >  CP000730/1383377‑1383652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.