New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 842190	64 (1.010)	3 (0.050)	3/264	10.3	5.0%	coding (2423/2847 nt)	uvrA	excision endonuclease subunit UvrA
	?	CP000730	= 842276	54 (0.890)					coding (2509/2847 nt)	uvrA	excision endonuclease subunit UvrA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTTGTGAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/842044‑842190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagttTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGACGTATCCAAGACCAACATCAACTAGTGTTTGTAACTTGCGCTTAATCTTAGGAATATTTTCAAAAAATTGTGTTGCTTCTTCAAC  <  CP000730/842276‑842138                                                                                                                                                                                                                                                                                                TCCTTGTGAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCG                                                                                                                                                   <  2:614219/141‑1       TGAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTT                                                                                                                                             >  1:165483/1‑141                TGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGTTTATTTTCAGAAGATTAAGCGCAtgagacaaactgt                                                                                                                                    >  2:201123/1‑128                                           ACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTTCACACGTTGAGCCTCACCACCTGATAACGTTGTAG                                                                                                         >  2:142206/1‑141                                                                                                   aaaAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGANGTANCCAANACCAACATCNNCTAGTGTTTGTAACTTG                                                 <  1:582501/138‑1                                                                                                      AAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGACGTATCCAAGACCAACATCAACTAGTGTTTGTAACTTGCGC                                              <  1:142206/141‑1                                                                                                                                               AAGTTTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGACGTATCCAAGACCAACATCAACTAGTGTTTGTAACTTGCGCTTAATCTTAGGAATATTTTCAAAAAATTGTGTTGCTTCTTC     >  2:507400/1‑141                                                                                                                                                AGTTTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGACGTATCCAAGACCAACATCAACTAGTGTTTGTAACTTGCGCTTAATCTTAGGAATATTTTCAAAAAATTGTGTTGCTTCTTCA    >  2:174351/1‑141                                                                                                                                                  TTTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGACGTATCCAAGACCAACATCAACTAGTGTTTGTAACTTGCGCTTAATCTTAGGAATATTTTCAAAAAATTGTGTTGCTTCTTCAAC  <  2:566426/141‑1                                                                                                                                                                                                                                                                                                TCCTTGTGAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/842044‑842190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagttTCACACGTTGAGCCTCACCACCTGATAACGTTGTAGCTTGTTGACCTAATGTGACGTATCCAAGACCAACATCAACTAGTGTTTGTAACTTGCGCTTAATCTTAGGAATATTTTCAAAAAATTGTGTTGCTTCTTCAAC  <  CP000730/842276‑842138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.